Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1519 TTGCTCGCTCACGCCGCCGCCGCACCATCATCATCGTCTCAAGGTCTCACTCTCAACTCTCATCTTCTCCTTCAtggcagtcagcatctcagatCTACTATTCTTCAATCTTCAGGATTCGAAGCTCCACATCCCAATCCAGTCGACGGTGACCCGAACCCGACGCGCTTAGTACCGACAATGGTGTACTGTGATCACTGTAGAAGAAATGTTTCTGGAGCACGACCAGATGACAGTTCCCTATGTTGTGAATTATGCGGAAAGGTTTTGGAAGATTTGTATATTACTCAAGATGTCTCTTTTGTAAAAGATGCAGCGGGGCAGAGCAAACTATCAGGTCATTTTGTAAAATCGATACAAAGTGAGTACTCTGCATCACGCCAAAGGACGTTAGATAAAGCACTCGATGATATGAGGTATCTAAGTTTTAGCCTTGGAGTGGAAGATACTGGTTTGGTCACACAAGCATTGGCCTTTTATAAAATAGCAATTGAAAGGAATTTCACAAGGGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGGGAGAATAATAAGCCATACCTTCTTATTGATTTCTCAAATTATTTAAGAACAAATGTTTATGTTCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTAAGGCTCGAAGAGCACCCCATTGTTCAGAAACCTGTTGATCCTAgcctatttatttttaaatatacaaataATTTATTGAAGCAAAGGAATATGGTTGTTACTGAAACTGCGCTGAGTATTGTTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGAAAACCTAGTGGCTTATGTGGTGCAGCATTGTACATAGCTGCTCTTGCACATGGTTTCAAGTGCTCTAAGTCTGACATTCTAAGAATTGTCCATGTATGTGAAGCCACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAGACTCTGCAAGCTTGACAGTTGATGAGTTGAATATTATGGCAAGAGAGCGTGAAAAAAATCCGATTGAAAAACCAAATTGTGGATCAGAGGAACATACCTCAAAGGATCTACTTTGCGAACACAAAGATAGTGGTGTGCTCCATCATGCCCATGGATTATGTGAAACATGTTATAAGGATTTCGTTAAACTCTCCGGAGGACTTGATGGTGGTTTGGATCCTCCTGCATTCCAGCGGGCTGAGAGGGAGAGAATGACAAAATCACTTTCTAAGGAAAGTGCCGATCAAGCAAGTGATTTGGAGAAAGTATCTAATGGTGCGTCTGCAAGCCAAAAAGAAGAACTGCATGCTTTTGGACCAGAAAGCATTGGTGGAAACTTCTGGGCTGATGTTGAGCACGTTACTACAAAAGATGGCATTTGTGATGATGAATCACGTGGGGAAGATGATGGTGCAGAAATTCAATCGGAAAGTTTTTCTGATATTGATGATTCGGAGGTTGATGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGAGGCTTATATGGGAAGAAATGAATCGGGAGTATCTTGagGAGCAAGCAGCCAAGGAAGCAGCAGCTGCTGCTGCTAAGGAAGCTTTTGAGGCAAATTTTCAAAACTGTTCTGAGGATATGCTAGCAGCAAAAGAGCTTGCTGAATCTGCTGCTGCCGCTGTGGCAAAATCCAGAAAGGTGACTTTTGAGTCATTTTCTTCGTGTATGTGCCAGTGCTTGTGTATTGACACTGGTGAAAAGAAGCAGAGACGTGCCCAAGAGGCAAAGAATTCAGGTCCTGCTCAATCAGCTGCTGAGGCTACTCGCAAAATGTTGATTAATAagAGGCTCAGCTCCAAAGTCAATCTTGACCGCTTGGATAATTTATTTGATGATACGGAGGCTCCGGAGATTACTAAGAAAGTACGATTTGAGCTGCACTCTGATAAACTTGGTAAGGTAGAGCCTGAGCTAGAGGATAAAATCAAAGATTCAGTTAATGAATTTGAGGGTGTAGATGATATggtcgaagaagagaacttgtATGATGAAACATATGAccatgaagaagatgatgactaTGGATATGATGGTTACTGA 2079 0.4045 LLAHAAAAPSSSSQGLTLNSHLLLHGSQHLRSTILQSSGFEAPHPNPVDGDPNPTRLVPTMVYCDHCRRNVSGARPDDSSLCCELCGKVLEDLYITQDVSFVKDAAGQSKLSGHFVKSIQSEYSASRQRTLDKALDDMRYLSFSLGVEDTGLVTQALAFYKIAIERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTNNLLKQRNMVVTETALSIVASMKRDWMQTGRKPSGLCGAALYIAALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTDSASLTVDELNIMAREREKNPIEKPNCGSEEHTSKDLLCEHKDSGVLHHAHGLCETCYKDFVKLSGGLDGGLDPPAFQRAERERMTKSLSKESADQASDLEKVSNGASASQKEELHAFGPESIGGNFWADVEHVTTKDGICDDESRGEDDGAEIQSESFSDIDDSEVDGYLHNEEEKHYKRLIWEEMNREYLEEQAAKEAAAAAAKEAFEANFQNCSEDMLAAKELAESAAAAVAKSRKVTFESFSSCMCQCLCIDTGEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDTEAPEITKKVRFELHSDKLGKVEPELEDKIKDSVNEFEGVDDMVEEENLYDETYDHEEDDDYGYDGY 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1519 692 PRINTS Transcription initiation factor IIB signature 76 96 IPR000812 GO:0006352|GO:0070897
Sto8g1519 692 PRINTS Transcription initiation factor IIB signature 179 198 IPR000812 GO:0006352|GO:0070897
Sto8g1519 692 PRINTS Transcription initiation factor IIB signature 273 289 IPR000812 GO:0006352|GO:0070897
Sto8g1519 692 MobiDBLite consensus disorder prediction 402 433 - -
Sto8g1519 692 MobiDBLite consensus disorder prediction 662 692 - -
Sto8g1519 692 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 61 627 IPR029529 GO:0000126|GO:0000995|GO:0006383
Sto8g1519 692 MobiDBLite consensus disorder prediction 402 418 - -
Sto8g1519 692 Pfam Transcription factor TFIIB repeat 129 217 IPR013150 GO:0017025
Sto8g1519 692 Pfam Transcription factor TFIIB repeat 230 319 IPR013150 GO:0017025
Sto8g1519 692 MobiDBLite consensus disorder prediction 459 488 - -
Sto8g1519 692 CDD CYCLIN 154 203 IPR013763 -
Sto8g1519 692 MobiDBLite consensus disorder prediction 664 692 - -
Sto8g1519 692 Gene3D - 233 324 - -
Sto8g1519 692 Pfam Brf1-like TBP-binding domain 480 624 IPR011665 -
Sto8g1519 692 CDD CYCLIN 233 308 IPR013763 -
Sto8g1519 692 MobiDBLite consensus disorder prediction 465 484 - -
Sto8g1519 692 SUPERFAMILY Cyclin-like 232 325 IPR036915 -
Sto8g1519 692 SUPERFAMILY Cyclin-like 144 223 IPR036915 -
Sto8g1519 692 Gene3D Single helix bin 473 522 - -
Sto8g1519 692 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 61 627 IPR000812 GO:0006352|GO:0070897
Sto8g1519 692 SMART cyclin_7 136 218 IPR013763 -
Sto8g1519 692 SMART cyclin_7 236 319 IPR013763 -
Sto8g1519 692 Gene3D - 123 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1519 Sto-Chr8 9667648 9684022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1519 61 605 Inorganic Solute Cotransporters AT2G01280 40.285 3.06e-111 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1519 K15196 - gmx:100789154 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1519 8 9667648 9684022 Sto8g1519 8 9667648 9684022 ECH