Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1465 ATGGAACAAGAACCGCTTCTGCAAGACGGTGAAATTAGCCGTACTCGTGGAAATTATCCCATCCTCCGCGGCTCCACCATACGCACTAGTTTCACCCTACCCCTAACTCGCTACACCACCCGTCTGATCACCGCCGAACACCACCGGATTTTCCTCGGAGATTGTATGGAGCACTCATCGGAGGACGACGATGACCGACCCGCTGAGGATGGCAGTTGCGCCTATTCGAGGCCCATTTTGGTTCTAGACCTAGTATGGAACCTAGCCTTCGTGCTTGTCGCTGCTGGGGTCCTTCTTTCGACGTTTAGCGAGCGGCCATCGACTCCTCTGAGGCTTTGGCTCTGTGGGTATGCTTTTGAGTGTGTTCTGCATATGGGTTTTGTGTATTTGGAGTATCGGAGGAGGAGTCATGATGACTTTTGCTATGCTGAGCTTGGGCTTTCAGTATCTCAGAGTGGGAACTGCATTTTGAAGAAGTTAGAATCTATTAACACACTGGCATCATCTATTTGGTGGGTCTTTGGATTTTATTGGATTGTTGTGGGTGGCCAGCAACTTTTGCAAGATTGTCCTCGTCTCTATTGGTTAACGGTGGTCTTTCTAGcctttgatatattttttattatcttttgcaTTGGGATGGTAtgtataattttctttgctATCTTCTGTTTCATCCCAATAGTAGCATTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAGGATATCAGGTCTCTTACTAAGTATAAGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAGTAAGAAGCAAGTTTCTAAAGCAAGAAAGGATGCAAGCAATAGCAACCATGTTGGTGAATTGTATCTTAACCCAGATGATTCGGAATGCTGCATCTGCCTTTCTCCATATGTAGATGGAGCAGAACTGTATCGCCTTCCCTGCACACACCATTTTCATTGTGGATGCATTAGCAAATGGCTTAGGACAAAAGCAACTTGTCCTCTCTGCAAATTTAACATTCTAAGAGGCGATACGTTGGTTTGA 1041 0.438 MEQEPLLQDGEISRTRGNYPILRGSTIRTSFTLPLTRYTTRLITAEHHRIFLGDCMEHSSEDDDDRPAEDGSCAYSRPILVLDLVWNLAFVLVAAGVLLSTFSERPSTPLRLWLCGYAFECVLHMGFVYLEYRRRSHDDFCYAELGLSVSQSGNCILKKLESINTLASSIWWVFGFYWIVVGGQQLLQDCPRLYWLTVVFLAFDIFFIIFCIGMVCIIFFAIFCFIPIVALAYAMRIREGASEEDIRSLTKYKFSQSNSLVMVDDSKKQVSKARKDASNSNHVGELYLNPDDSECCICLSPYVDGAELYRLPCTHHFHCGCISKWLRTKATCPLCKFNILRGDTLV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1465 346 SUPERFAMILY RING/U-box 287 340 - -
Sto8g1465 346 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Sto8g1465 346 PANTHER RING-FINGER UBIQUITIN LIGASE 25 346 - -
Sto8g1465 346 Pfam Ring finger domain 294 336 IPR001841 -
Sto8g1465 346 PANTHER TARGET OF ERK KINASE MPK-1 25 346 - -
Sto8g1465 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 340 IPR013083 -
Sto8g1465 346 SMART ring_2 295 335 IPR001841 -
Sto8g1465 346 CDD RING-H2_RNF111_like 294 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1465 Sto-Chr8 9358220 9361642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1465 57 343 C3H Transcription Factor Family AT1G68070 46.000 4.02e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1465 - - ahf:112696795 489.96