Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1450 ATGTCAAATAgcagaaacactcattggtgttATAGTTGCAGGAGGCCAGTTCAGCTACAGGGGCGAGATGTGGTGTGCCCTAATTGTAGTGAAGGATTTGTTCAAGAACTTGATGATATGGTCATCAACCCACTAGAATTCTTTGGACTAGACAATGGTGAAGAACGTGACAGAAGGTTCAGACTTATGGAAGCGTTCTCAGCCTTTATGAGGCATCGACCAGTAGATAGAAGCCATAGGCATGATATCATAGTTGGATCAGGTTCAATTCCTGAACGTGGTCCAGGGCATGCCCCTCTACTGCTTTTTGGTGGTCAGATTCCATTCAGATTGTCTGGAAATGGTGGTTTTGAAGCCCTTTTCAATGGGACTCCTGGAATTGGTTTAATGCAAGGAAACACAGGTGATTATTTTATTGGTCCTGGACTGGAAGAACTGTTTGAACAGCTTTCAGCAAATGATCGGCGAGGTCCTCCGCCAGCATCCAGGTCTGCAATAGATGCAATGCCTACTATCAAGATCACACATAGGCTTCTTCGTTCAGATTCACATTGTCCAGTATGCCAAGATAAATTTGAGCTGGGGTCTGAAGCAAGGCAAATGCCATGTAACCATATATATCACTCAGACTGTATTGTTCCATGGTTGGTACAGCACAACTCCTGCCCTGTTTGTCGCCAGGAGTTGCCACCACAAGGATTGAGTAGCAACCGTGGCTCTAATGGTCAAAGTAGAGCCAATTCTGGTAATAATTCCAGTGGAAGGGTAAATGGTAGGGAGAGCCAGGGAAGAAGGAATCCACTTTCCTATTTTTGGCCTTTCCGTTCATCTAATTCTAATAACAGTGGAGCAGGGGGAAGCAGCTCACCAACACGGCCTGTCCCTGAGAATAACCACCAATCGGAGTATTCTGGATGGCCATTTGAGTAA 930 0.4441 MSNSRNTHWCYSCRRPVQLQGRDVVCPNCSEGFVQELDDMVINPLEFFGLDNGEERDRRFRLMEAFSAFMRHRPVDRSHRHDIIVGSGSIPERGPGHAPLLLFGGQIPFRLSGNGGFEALFNGTPGIGLMQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSAIDAMPTIKITHRLLRSDSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGQSRANSGNNSSGRVNGRESQGRRNPLSYFWPFRSSNSNNSGAGGSSSPTRPVPENNHQSEYSGWPFE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1450 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 300 - -
Sto8g1450 309 MobiDBLite consensus disorder prediction 233 264 - -
Sto8g1450 309 CDD RING-H2_RNF126_like 185 226 - -
Sto8g1450 309 MobiDBLite consensus disorder prediction 233 309 - -
Sto8g1450 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Sto8g1450 309 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Sto8g1450 309 MobiDBLite consensus disorder prediction 271 309 - -
Sto8g1450 309 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Sto8g1450 309 SMART ring_2 185 225 IPR001841 -
Sto8g1450 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 300 - -
Sto8g1450 309 SUPERFAMILY RING/U-box 164 232 - -
Sto8g1450 309 Pfam Ring finger domain 184 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1450 Sto-Chr8 9275781 9276710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1450 120 230 C3H Transcription Factor Family AT5G01980 42.609 1.32e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1450 K11982 - qsu:112031639 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1450 8 9275781 9276710 Sto8g1450 8 9275781 9276710 ECH