Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1446 ATGTCAGACAGAGTATTGTTGAGCGATGGTGAGCACAAGAAGCTGAAGCGCAAGATGATTGATGCTCATgaggcagaggcagaggcaTCACAAGAGAGAGATTTCCTGGGCCTGAACCTCATGGTGGGTGATTCCTCATGGCCCAATAAGGCCCCAAGAAGGAATCAAactgaagaaaaagaagaagaagaggaagaagaaaaagcagAAGAGAAGGAGCGTTTATTCTCGTGCAAATATTGCACCAAGAAGTTCCAAAGCTCCCAGGCTCTGGGCGGACACCAAAATGCTCACAGGCGAGAGCGAGTGCTGTCCAAGATTGACAAAGAGATCGATATGGGCCTCTTTGGGCGCTTCGGCCCATACTTTTGCCCATACTCTCACACTCCTCCTAACTTCCCCTTTCGTGGCTCGCCCTATTGTCACGACATGGTGCACCCAATGGCCCACATGTGTTGGCCTCCTTATGGATATGCCAACCGTGGTCCAACTCCTATGATGGACCAGCATCAGGCCCATCTCTTTGGGCCCACGAGGACCCCTTGGGCCGGAACTGGAGGCGACTTGAATCGCAGGAATCACACTTCTGCTGAGGATGCGCCTATGAATAATATTTTTGGACGCACTCGCAAGAACAATTTACATCTCCCAAATTTGCGTGCTTCATCCTCATCAAGGGCTCATGACTTGGCTAAGGCTGTAATTATCCCAGTTACTCAGAGTCACGGACCTTGGCTTCTCAAAATCCACATCAAGAATCTCATTCGCCAAACCTCTCAGCCCTACATTCCTCCTATCCGAATACATAGTAAGATCCACAGTGTTGCTTACCTCCAGATCGTAATCGTTCCACAGTTTCTGCACATCGTTACCTATCCCAACGCCGACGAAGGTGTAGTCCTCGTTACCGAGGAAGTCCACGAGAGAATCAGGAATGTAAGAGGCCTGCAGGATTTGGAAGATGAGGCAACGCCGCCCTACGCAGAGTTGAAGCGTCGCCACTGGATTCACGTAGCGACTAAAGCTAGGTCGCCACTCAACGTCCAGGCCTACTACCAGATTGTGGAGCCTACGGCGGTGGATGTACTCTATGGTGGATATCCAATCGTCCACCACCGACGGCGTCTCCGTCACGGTGGTGAAGATCTCGTCGTCGAAGAGAGTTACTTCGTATTCGCCGTGTGTTCCGTACTGGTTGATCATATTGATGTATATAGACATGGCTTCTCTGTGCTGCCTTTTGGGGTTTGA 1251 0.4836 MSDRVLLSDGEHKKLKRKMIDAHEAEAEASQERDFLGLNLMVGDSSWPNKAPRRNQTEEKEEEEEEEKAEEKERLFSCKYCTKKFQSSQALGGHQNAHRRERVLSKIDKEIDMGLFGRFGPYFCPYSHTPPNFPFRGSPYCHDMVHPMAHMCWPPYGYANRGPTPMMDQHQAHLFGPTRTPWAGTGGDLNRRNHTSAEDAPMNNIFGRTRKNNLHLPNLRASSSSRAHDLAKAVIIPVTQSHGPWLLKIHIKNLIRQTSQPYIPPIRIHSKIHSVAYLQIVIVPQFLHIVTYPNADEGVVLVTEEVHERIRNVRGLQDLEDEATPPYAELKRRHWIHVATKARSPLNVQAYYQIVEPTAVDVLYGGYPIVHHRRRLRHGGEDLVVEESYFVFAVCSVLVDHIDVYRHGFSVLPFGV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1446 416 PANTHER ZINC FINGER PROTEIN JAGGED 60 157 IPR045320 GO:0003700
Sto8g1446 416 SUPERFAMILY beta-beta-alpha zinc fingers 72 103 IPR036236 -
Sto8g1446 416 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 60 157 - -
Sto8g1446 416 Coils Coil 53 75 - -
Sto8g1446 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Sto8g1446 416 Gene3D Classic Zinc Finger 56 112 - -
Sto8g1446 416 MobiDBLite consensus disorder prediction 41 69 - -
Sto8g1446 416 Pfam C2H2-type zinc finger 76 101 - -
Sto8g1446 416 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1446 Sto-Chr8 9229144 9233402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1446 62 129 C2H2 Transcription Factor Family AT1G24625 48.529 1.50e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g1446 zf-C2H2_6 6.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1446 - - aprc:113874385 122.479