Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1403 ATGTCGTCTTTGGAGGAGTCTCTAAGATCTCTATCTCTGGACTACCTCAACCTCCTCATCAATGGCCAAGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGTCGTCTCGTCCACGCTCACCGCTGCATCCTGGCCGCGCGTAGCCTTTTCTTCAGGAAATTCTTCTGCGGCCCGGACCCTCCCTCGGGCCTCGACCCCTCCGGTGCGGGCTCCCGGGTCAGCCCGGGAAGTTCCAGCTCCAGCTCCAGACCACCGGGGGTGATTCCCGTGAACTCGGTGGGGTACGAGGTGTTCTTGCTTCTGCTTCAGTTCTTGTACAGTGGCCAAGTCTCTATTGTGCCTCAGAAGCACGAGCCCAGGCCTAATTGCGGTGAGAGGGCTTGCTGGCATACCCATTGCACCTCCGCCGTTGATCTTGCCCTTGATACCCTCGCTGCCGCTAGATCCTTTGGCGTTGAACAGCTCGCATTGCTCACCCAGAAACAACTGGCAAGCATGGTAGAGAAGGCGTCGATTGAGGATGTAATGAAGGTACTTCTGGCTTCAAGAAAGCAAGACATGCAGCAACTGTGGACCACTTGTTCCCACCTGGTAGCCAAGTCCGGTCTCCCTCCTGAGGTCCTCGCCAAACACCTCCCCATCGATATTGTGGCCAAGATCGAAGAACTTCGCCTCAAAACCTCCCTGGCTCGCCGCTCCCACCACCTCATCTccccccaccaccaccaccaccatcaccatCTCAGCGCCGCCGCCGACCTCGAGGACCAGAAAATCCGCCGAATGAGGAAGGCTCTAGACTCGTCCGATGTGGAACTGGTGAAACTGATGGTGATGGGGGAAGGCCTAAATCTGGACGAAGCATTGGCCTTACACTACGCCGTAGAGAATTGCAGCCGCGAAGTGGTGAAAGCGTTGCTGGAGCTGGGTGCGGCGGACGTGAACTACCCGGCAGGGCCGGCGGGGAAGACTCCGCTTCACATGGCGGCGGAGATGGTGTCGCCGGACATGGTGGCGGTGCTGCTGGACCACCACGCGGACCCAAACGTGAGGACGGTGGATGGGGTGACCCCTCTTGACATCCTTCGAACCCTAACTTCGGACTTTCTGTTCAAAGGAGCAGTGCCTGGGCTGACACATATGGAACCCAACAAGCTGAGGCTGTGCCTGGAGCTGGTCCAATCAGCGGCTCTGGTGCTGTCACGTGAGGAAGGGAATGCAGGAAATCCGGAATCCTCAGCTTCAGCTTCAGCGCCTATATATCCACCAATGAGCGAAGAGAGCAATAGTAATACGAGTGGGAACCTGAACTTGGATGCAAGGTTGGTGTATCTCAATCTGGGCGCTACCACCTCCTCTTCTCAATTGCCTAATTCCAGATTAATGGACGCCAATGACGATGCCACCCACAGCCCTCATGCTGGATGTCACCCATCAATGTACCACCACTCTCATCACTTTCATTAA 1467 0.5549 MSSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGAGSRVSPGSSSSSSRPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERACWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKTSLARRSHHLISPHHHHHHHHLSAAADLEDQKIRRMRKALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHMAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHMEPNKLRLCLELVQSAALVLSREEGNAGNPESSASASAPIYPPMSEESNSNTSGNLNLDARLVYLNLGATTSSSQLPNSRLMDANDDATHSPHAGCHPSMYHHSHHFH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1403 488 CDD BTB_POZ_NPR_plant 9 167 - -
Sto8g1403 488 Gene3D Potassium Channel Kv1.1; Chain A 2 200 IPR011333 -
Sto8g1403 488 SUPERFAMILY Ankyrin repeat 280 364 IPR036770 -
Sto8g1403 488 SMART BTB_4 26 167 IPR000210 GO:0005515
Sto8g1403 488 MobiDBLite consensus disorder prediction 454 488 - -
Sto8g1403 488 SMART ANK_2a 321 350 IPR002110 GO:0005515
Sto8g1403 488 SMART ANK_2a 286 316 IPR002110 GO:0005515
Sto8g1403 488 Pfam Domain of unknown function (DUF3420) 202 263 IPR024228 -
Sto8g1403 488 Pfam BTB/POZ domain 17 115 IPR000210 GO:0005515
Sto8g1403 488 ProSiteProfiles Ankyrin repeat region circular profile. 321 351 - -
Sto8g1403 488 Pfam Ankyrin repeats (3 copies) 269 351 IPR002110 GO:0005515
Sto8g1403 488 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 3 486 IPR044284 GO:0099402
Sto8g1403 488 PANTHER REGULATORY PROTEIN NPR5 3 486 - -
Sto8g1403 488 MobiDBLite consensus disorder prediction 65 85 - -
Sto8g1403 488 MobiDBLite consensus disorder prediction 406 433 - -
Sto8g1403 488 ProSiteProfiles Ankyrin repeat profile. 321 353 IPR002110 GO:0005515
Sto8g1403 488 MobiDBLite consensus disorder prediction 71 85 - -
Sto8g1403 488 Gene3D - 244 369 IPR036770 -
Sto8g1403 488 SUPERFAMILY POZ domain 10 196 IPR011333 -
Sto8g1403 488 MobiDBLite consensus disorder prediction 404 433 - -
Sto8g1403 488 ProSiteProfiles BTB domain profile. 26 114 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1403 Sto-Chr8 8945305 8947627 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto8g1403 BTB 3e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1403 K14508 - zju:107433767 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1403 8 8945305 8947627 Sto13g2805 13 33497380 33499873 CCT
Sto8g1403 8 8945305 8947627 Sto8g1403 8 8945305 8947627 ECH