Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1381 ATGGGATGGTCCTTATTAGTTGAGGAGACTGAGACCTGCGATGAGTACTCATTGCCTCATCAGGTGGAGACGTGTACATCATCGCCTTCCTCAGTAGCGAACAAGTTTAATCACAATGCTAGTGAACGCCATCGCCGCAAGAAGATCAATACTCTCTATTCCTCCCTTCGTTCCCTCCTTCCTCTCTCACACCGTCAAATGAAAAAAGTGAGCATTCCGGCGACCATTTCAATGGTGGTGAAATACATACCTGAGTTAGAGCAGGAAGTGGAAGGGCTTGTTAAGAAGAAGGAGCAGCTTTTGTTGACAAATTCTGTTTCACCAAACCATAATTATAAACAACGATCTCAATCCAACTCTGCTAATTGCGTTGTTTCAACAACCAAACTCAATAATTGTGAAGGCCTTCTTCAGATTTCctcttattataatattattccaCTCTCTCACATCTTGCATTCTTTGGAACAACTTCATCCTAATAGCCTCTCCTTCCTAAATGCTTCTTCCTTTCACACCTTTCAAGGCACAGTCTTCCATCACTTGCATTTCcagGTGGGAAAATGTTGGAGATTAGAGTGGGATGAGATTATAACTGCCAAGCTTTTGTCTATATATGAAAACAAAGAGCAGGTTTTCTCATCAAATATTCATTACCTCAAACAATGA 669 0.4006 MGWSLLVEETETCDEYSLPHQVETCTSSPSSVANKFNHNASERHRRKKINTLYSSLRSLLPLSHRQMKKVSIPATISMVVKYIPELEQEVEGLVKKKEQLLLTNSVSPNHNYKQRSQSNSANCVVSTTKLNNCEGLLQISSYYNIIPLSHILHSLEQLHPNSLSFLNASSFHTFQGTVFHHLHFQVGKCWRLEWDEIITAKLLSIYENKEQVFSSNIHYLKQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1381 222 Coils Coil 83 103 - -
Sto8g1381 222 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 27 208 - -
Sto8g1381 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 105 IPR036638 GO:0046983
Sto8g1381 222 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 27 208 IPR015660 GO:0003700|GO:0006357
Sto8g1381 222 Pfam Helix-loop-helix DNA-binding domain 37 87 IPR011598 GO:0046983
Sto8g1381 222 Gene3D - 26 122 IPR036638 GO:0046983
Sto8g1381 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 86 IPR011598 GO:0046983
Sto8g1381 222 SMART finulus 39 92 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1381 Sto-Chr8 8804715 8805563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1381 32 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 38.298 1.94e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g1381 HLH 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1381 - - gmx:100803424 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1381 8 8804715 8805563 Sto8g1381 8 8804715 8805563 ECH