Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1337 TTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGGGATAGCCAAGGTGGGGCAATTGCAAACCACAGTAATGGGAATATGCGAGGAAGGGAGGTGAATTTGTTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGATGAAGACAAGGGTATTTTTTTTGGGACACACATGACAGAGGAGCGATACAGATCAATGCTTGGGGAACATATTcagaaatacaagaggaggtaTAAAGATACCTCATCTAGTCCAGCCCAAAATCGGGTTGGTGCTCCACTTCTTAAAAGTAATATAGGTTTGAAAGCTCGGAAGGCTGGGAATGGGAACAGAGGAGGATTACATGCTGTGGAGACTACATCTGAGTGGCCGAATGATAGTACTATTCAGAAACCTGTAAACCACCGTGATGCAGATTTCCCGCAGCAGTATGGCTCTGAAAGAACTATCTATGAACCAGCTTCTTTAGATATTGGGGATGGTGTTACTTACAAAATCCCTCCTACTTATGATAAGTTGGCGGCAATGTTGAACCTTCCAACTTTCTCGGATATTCGGGTGGAGGAGTTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGTTGGGCCTAGAAACCGAGCAGGCATGGGAGAAACCCTATCCCAATATGAATCACTCCAGGCACGACTAAAGGCCATGTCAGCTTCTAATTCAGCTCATCAATTTAGTTTGGAAGTATCTGATATTGGTTTGAATTCATCCATCCCAGAGGGGGCTGCTGGAAGAATGAAGCGATCTATTTTGTCTGAGGGCGGTGTATTGCAGGTTTATTATGTGAAGGTCTTGGAGAAAGGTGACACATATGAGATCATTGAACGAAGCCTACCTAAGAAGCAGAAGGTAAAGAAAGACCCTTCTCTGATTGAGAAGGAGGAAAGGGAAAGAATTGGAAAGGTATGGGTAAATATTGTAAGAAGAGACATACCAAAACACCATAGAACTTTTACTACTTTCCATCGAAAGCAACTTGTTGATGCCAAGAGGTTCTCTGAGAACTGTCAAAGAGAGGTTAAAGTGAAAGTGAGTAGatccctaaaattgatgaaGAGTGCAGCCATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTATTTTGGAAACGAGTAGATAAGGAGATGGCAGAAGTGAGGAAAAAAGAGGAGAAAGAAGCTGCTGAGGCTTTGAGGCGTGAGCAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTTAATTTCCTTATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTCAAACTTATTGTCTTCTGAAGCTTTACCAATGGTAGAAGAAACAGAAGATGATCAAGATGCACAGCTTGGCACTTCAGAAGCTGGGTCTATTCAGGAGGAAGACCCTGAAGAGGTTGAACTGAAGAAGGAAGCTTTTAAGGCTGCTCAAGAAGCAGTCTCCAAGCAGAGACAGTTGACCAGTGCTTTTGATAGTGAATGCTTGAGGCTTCGCCAGGCAGGTGAAACTGATGCACTTTCACAGGAAGTAGCAGGAGCGAGTAATATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCATCCACGGTTCGAACACCAGAATTGTTTAGAGGTTGTCTTAAAGAATATCAGTTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAAGGTCTAAACGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATCCAGGCCATGGCATTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTCGTGGCACCTGCATCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAAATGAAAGTGCTTCCATATTGGGGTGGGCTTCATGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAgGGAAGCTAAATTCCACATTCTCATCACAAGTTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATTAAAAGTTCAAACAGTATAAGATGGAAGACACTTCTAAGCTTTAATTGTCGGAACCGCTTGCTGCTGACTGGTACACCAATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCATTTTATTATGCCAACTTTATTTGATAGTCATGAGCAGTTTAACGAATGGTTCTCAAAAGGAATTGAAAACCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAACAGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGACGAGTTAAAAAAGATGTAATATCTGAGCTGACTAGGAAAACAGAGGTTACAGTGCACTGCAAGTTGAGTTCACGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAGATTTCTCTTGCTGAGTTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATAGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAACCACATACTTTAACTTTGGAGAGATTCCAAATTCCCTTCCACCCCCTCCATTTGGGGAGTTGGAGGACGTATACTACTCTGGAGGTCATAATCCCATATCATACAAGATACCAAAACTTGTCCATCAAGAAATTATACAAGGTTCAAAAATGTTCCATTCAGCTGATGCTCGTGGTGTGAACAGAGAATCTTTTcacaaactttttaatatttatagccCAGACAATGTTTTCCAGTCTATCTTCTCTCAAGGGAATAAATCAAATGGGTTAAGTGTTATAAGTGGAACTTTTGGTTTTACCCATTTGATGGATTTGTCTCCTCAAGAAGTGACGTTTTTAGCTACTGGTTCTTTTATGGAGCGACTGCTATTTTCTATGGTAAAATGGGAGCAGAAATTTATCAATGAAGTTGTAGACTTTCTTTCAGAGACTCTAGATAATGATCCTGAGTGCAGTTaccttgaaaaaggaaaagtgaGGGCTGTTACACGAATGTTATTGGTGCCAACTAGATCAGAGACTAAGATCTTTCAGAGAAAATTTGCTACCGGTCCCAGTCACGCCCCTTTTGAGGCCTTGATTGTCCCATGTCAGGATAGGATTTTATCCAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCTCGAACTAGAGCTCCTCCAatTGGAGCCCATTGCTCGGATCGAAGTTTTTCTTATAAAACAATGGAAGAATTACATGACCCTTGGGTTAAAAGGTTGTTTGTGGGATTTGCACGTACATCCGATTATAATGGACCTAGAAAGCCAGATGGTCCACCTCATCATTTAATTGAAGAGATTAATTCTGAACTACCAGTTGCACAGCCAGCTCTTCAGTTAACCTACAAAATTTTAGGTTCTTCACCCCCAATGCGAAATTTTGACCCGGCAAAGTTACTCACTGACTCCGGGAAGCTCCAAACACTTGATATATTGTTGAAACGATTGCGGGCCGAAAATCATCGCGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAACATTCTTGAGGACTATATGAATTATAGAAAATATAGATATTTGAGACTTGATGGATCATCAGCTATTCAGGACCGTAGAGACATGGTCAGAGATTTCCAGCATAGGAGTGATATTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGGTTGGGTATCAACTTGACAGCTGCTGACACTGTAATTTTTTATGAGAGTGATTGGAATCCTACATTGGATCAACAGGCAATGGATAGAGCTCATCGTTTGGGTTACTGTTTACCGACTTATATGTAA 3930 0.4071 LMNFQLPQQDDDFDYYGNSSQDESRDSQGGAIANHSNGNMRGREVNLLKKRKWSQNSDDEDKGIFFGTHMTEERYRSMLGEHIQKYKRRYKDTSSSPAQNRVGAPLLKSNIGLKARKAGNGNRGGLHAVETTSEWPNDSTIQKPVNHRDADFPQQYGSERTIYEPASLDIGDGVTYKIPPTYDKLAAMLNLPTFSDIRVEEFYLKGTLDLGSLAAMMASDKRVGPRNRAGMGETLSQYESLQARLKAMSASNSAHQFSLEVSDIGLNSSIPEGAAGRMKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPSLIEKEERERIGKVWVNIVRRDIPKHHRTFTTFHRKQLVDAKRFSENCQREVKVKVSRSLKLMKSAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPMVEETEDDQDAQLGTSEAGSIQEEDPEEVELKKEAFKAAQEAVSKQRQLTSAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPELFRGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKVLPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGTTYFNFGEIPNSLPPPPFGELEDVYYSGGHNPISYKIPKLVHQEIIQGSKMFHSADARGVNRESFHKLFNIYSPDNVFQSIFSQGNKSNGLSVISGTFGFTHLMDLSPQEVTFLATGSFMERLLFSMVKWEQKFINEVVDFLSETLDNDPECSYLEKGKVRAVTRMLLVPTRSETKIFQRKFATGPSHAPFEALIVPCQDRILSNARLLHSAYTYIPRTRAPPIGAHCSDRSFSYKTMEELHDPWVKRLFVGFARTSDYNGPRKPDGPPHHLIEEINSELPVAQPALQLTYKILGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSAIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDQQAMDRAHRLGYCLPTYM 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1337 1309 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 581 752 IPR014001 -
Sto8g1337 1309 Coils Coil 406 445 - -
Sto8g1337 1309 Pfam SNF2-related domain 584 871 IPR000330 GO:0005524|GO:0140658
Sto8g1337 1309 ProSiteProfiles DBINO domain profile. 334 459 IPR020838 GO:0003677
Sto8g1337 1309 Gene3D - 1160 1308 IPR027417 -
Sto8g1337 1309 MobiDBLite consensus disorder prediction 1 42 - -
Sto8g1337 1309 MobiDBLite consensus disorder prediction 468 493 - -
Sto8g1337 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 797 IPR027417 -
Sto8g1337 1309 Gene3D - 807 876 IPR027417 -
Sto8g1337 1309 Pfam Helicase conserved C-terminal domain 1193 1302 IPR001650 -
Sto8g1337 1309 CDD SF2_C_SNF 1181 1302 - -
Sto8g1337 1309 PANTHER CHROMATIN-REMODELING ATPASE INO80 2 1302 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Sto8g1337 1309 PANTHER HELICASE SRCAP-RELATED 2 1302 - -
Sto8g1337 1309 MobiDBLite consensus disorder prediction 1 41 - -
Sto8g1337 1309 MobiDBLite consensus disorder prediction 115 149 - -
Sto8g1337 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 1302 IPR027417 -
Sto8g1337 1309 SMART ultradead3 565 760 IPR014001 -
Sto8g1337 1309 Pfam DNA-binding domain 329 458 IPR020838 GO:0003677
Sto8g1337 1309 Gene3D - 566 806 IPR038718 -
Sto8g1337 1309 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1193 1309 IPR001650 -
Sto8g1337 1309 SMART helicmild6 1219 1302 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1337 Sto-Chr8 8527555 8535666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1337 590 885 RAD5 or RAD16-like Gene Family AT5G43530 28.947 1.10e-26 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto8g1337 SNF2_N 5.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1337 K11665 - gmx:100780615 2180.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1337 8 8527555 8535666 Sto8g1337 8 8527555 8535666 ECH