Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1325 atgataataatgGGAAGAGGGAAAATAGAGATAAAGAAGATAGAGAATTTGAATAACAGGCAGGTAACGTTTTCCAAGAGACGCAATGGGTTGCTGAAGAAGGCGAAGGAGCTCTCTGTTTTGTGTGATGCACAGGTTGCAGTCATCATCTTCTCCAGCACTGGAAAGCTTTATCACTTCTCTAACACAAGAAGGATGATGGGAAAGGAGCTTGATGGATTGAAATTTAAAGAGCTACAGAACCTAGAAAATCAATTGAGTGAAGGGATATTATCTGTCAAAGACAAGAAGGAACAGGTACTTGTAGAGCAACTCCGGAGGTCTAGACTACagGAACAGCAAGCCATGCTGGAAAATGAAGCTCTGCGTAAGCaaATTGAGGAGATGCAGAATAGAGCAAACACACACTTTCTTGATTTGAATCCTTTAGACAGCAGGTTGTCAATGGATTTTGGTCGCAAGAGGAAAGCACTGAAAACAGAACCTTGTAACGACTCAGCAGGGACTCAATTAACCTTAGTTCCTTCttcttga 534 0.4045 MIIMGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAQVAVIIFSSTGKLYHFSNTRRMMGKELDGLKFKELQNLENQLSEGILSVKDKKEQVLVEQLRRSRLQEQQAMLENEALRKQIEEMQNRANTHFLDLNPLDSRLSMDFGRKRKALKTEPCNDSAGTQLTLVPSS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1325 177 PANTHER BNAC04G24260D PROTEIN 4 62 - -
Sto8g1325 177 PANTHER BNAC04G24260D PROTEIN 64 129 - -
Sto8g1325 177 Coils Coil 105 139 - -
Sto8g1325 177 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Sto8g1325 177 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Sto8g1325 177 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Sto8g1325 177 ProSiteProfiles K-box domain profile. 36 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto8g1325 177 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Sto8g1325 177 Coils Coil 79 99 - -
Sto8g1325 177 MobiDBLite consensus disorder prediction 157 177 - -
Sto8g1325 177 MobiDBLite consensus disorder prediction 163 177 - -
Sto8g1325 177 CDD MADS_MEF2_like 5 63 IPR033896 GO:0000977|GO:0045944
Sto8g1325 177 Pfam K-box region 62 126 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto8g1325 177 SUPERFAMILY SRF-like 5 71 IPR036879 GO:0003677|GO:0046983
Sto8g1325 177 PANTHER SERUM RESPONSE FACTOR HOMOLOG 64 129 - -
Sto8g1325 177 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 62 - -
Sto8g1325 177 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Sto8g1325 177 Gene3D - 16 84 IPR036879 GO:0003677|GO:0046983
Sto8g1325 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 60 IPR002100 GO:0003677|GO:0046983
Sto8g1325 177 ProSitePatterns MADS-box domain signature. 6 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1325 Sto-Chr8 8418257 8420805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1325 4 138 MADS-box Gene Family AT5G13790 45.304 4.74e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto8g1325 K-box 8.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1325 - - gmx:100792278 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1325 8 8418257 8420805 Sto8g1325 8 8418257 8420805 ECH