Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1318 ATGGCTTCCCCTTCCTCTGATCCTGCCAAGTCGGAAgttggcggcggcggcggcggagagCCTTCGGAAGCGGTGATCGCCAACGATCAGCTCTTACTCTATCGGGGATTGAAGAAAgcgaagaaagaaagaggttgTACAGCCAAAGAGCGCATCAGCAAGATGCCTCCTTGTGCTGCAGGGAAACGCAGCTCCATATACCGTGGTGTTACTAGGCATAGATGGACTGGTCGTTATGAAGCCCATCTTTGGGATAAGAGTACATGGAACCAGAATCagaataaaaagggaaagcaaGGAGCGTATGATGAGGAGGAGGCTGCAGCGAGGGCATATGACCTTGCTGCTCTGAAATACTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAAAATGTTTCTAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGAATCTCAAAATATCGTGGACTCTCCAGTCGATGGGAGTCATCATATGGTCGTATGGCTGGATCTGATTACTTCAATAGTATACATTATGGTGATGATTCAGCCGCAGAAAGTGAATATGTAAGTGGTTTTTGTATAGAAAGAAAGATTGATTTAACAAGTTACATCAAGTGGTGGGGATCCAATAAAAGTCGCCAGCCTGATGCTGGAGCAAAATCATCAGAAGAAAAAAAGCATGGATTTTCCGGAGATATGTGTGGTGAGTTCAAAACATTGGAGCGGGGACACCAACCCACTGAACCGTACCAGATGCCGCAGTTAGGCCTGCCCCATGATGGGAAAAGGCATAAAAGTTCTGCAGTCTCTGCCTTAAGTATCCTAGAACGATCAGCAGCCTACAAGAGCCTGCAAGAGAAGGCGTCAAAGACGCAAGAAACTTACATTGATAATGATGAGGGTGAAAACAAGAATACCATCAATAAGTTGGACCATGGCAAGGCTGTTGAGCAATCATCAAATCATGATGGCAGCGACGAAAGGCTTGACATTGCAATGGGAATGAGTGGGGCATTGTCTATACAAAGAAATGTTTACCCGTTGACTTCGTTTTTATCTGCACCACTTTTGACAGCCTATAATACTGTTGACCCCTTGGTAGATCCTGTTCTCTGGACGTCTCTTGTTCCTATACTTCCTGCTGGCCTTTCTCGTACAACCGAGGTTGGTATATCTTCTAAAATGCTTACTTTGTTTGAGTGA 1242 0.4251 MASPSSDPAKSEVGGGGGGEPSEAVIANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWESSYGRMAGSDYFNSIHYGDDSAAESEYVSGFCIERKIDLTSYIKWWGSNKSRQPDAGAKSSEEKKHGFSGDMCGEFKTLERGHQPTEPYQMPQLGLPHDGKRHKSSAVSALSILERSAAYKSLQEKASKTQETYIDNDEGENKNTINKLDHGKAVEQSSNHDGSDERLDIAMGMSGALSIQRNVYPLTSFLSAPLLTAYNTVDPLVDPVLWTSLVPILPAGLSRTTEVGISSKMLTLFE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1318 413 ProSiteProfiles AP2/ERF domain profile. 66 129 IPR001471 GO:0003700|GO:0006355
Sto8g1318 413 SMART rav1_2 66 135 IPR001471 GO:0003700|GO:0006355
Sto8g1318 413 MobiDBLite consensus disorder prediction 230 249 - -
Sto8g1318 413 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 402 - -
Sto8g1318 413 MobiDBLite consensus disorder prediction 224 249 - -
Sto8g1318 413 MobiDBLite consensus disorder prediction 1 23 - -
Sto8g1318 413 PANTHER BNAA03G19580D PROTEIN 1 402 - -
Sto8g1318 413 Gene3D AP2/ERF domain 66 131 IPR036955 GO:0003700|GO:0006355
Sto8g1318 413 Pfam AP2 domain 66 121 IPR001471 GO:0003700|GO:0006355
Sto8g1318 413 SUPERFAMILY DNA-binding domain 65 130 IPR016177 GO:0003677
Sto8g1318 413 MobiDBLite consensus disorder prediction 305 339 - -
Sto8g1318 413 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Sto8g1318 413 PRINTS Ethylene responsive element binding protein signature 111 131 IPR001471 GO:0003700|GO:0006355
Sto8g1318 413 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1318 Sto-Chr8 8342900 8346051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1318 25 402 AP2-EREBP Transcription Factor Family AT2G41710 65.385 1.13e-162 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto8g1318 AP2 6.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1318 K09285 - gmx:100786651 665.225