Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1305 ATGGGTACTCCCGAATTCCCAGATCTTGGAAAGCATTGTGCTGTTCAAGATTGCAAGCTCATTGATTTCTTGCCCTTCACGTGCGATCGTTGCGATCagGTGTATTGTTTGGAGCACAGAAGTTATATCAAACACCAATGTCAAAAAGCTGACAAATTAGACGTCACCGTTGTCATATGTCCACTCTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTTAATACTGACTGTGACCCATCAAATTATGAGAGAGCcgtgaagaagaaaaaatgccCTGCCCCTGGATGCAGAGAGATCTTGGTGTTCTCAAACACAATCAAATGCAGGGACTGCTTGATAGATCATTGTTTGAAGCATCGGTTCGGACCCGATCACAAGTGTCCAGGACCGAAAACCTTGGATACAAGTTTTTCATTTATGTCTCTTTTGAGCAAGAGTAGAAAAGAGGAGTCAAAGCCAAACCCTCCTTCATCAACTACATCTTCATCAAAATGGGCTTCAAGCTTTCTCAATGCAGCTTCAAACATTCGAGCCTCGGCCGAGGCCGGCATGTCAAAGTTGGGTACTGAAATTAACCAAGCTTGGCAAACAGCAAGGGATGGGATGGGACAAAGCGGTAGCAGTAACAGTAGCAATGGTCATGGAAATGGGCAAGTGGAGGTGGAGCAATGCCCTCAGTGTGGGGCaaagttttcgtcggtgactaTGTTGGTGGATCATGTGCAAAAAGTTCACGAACGGAGCAGCAGAAACCGATCCAGAGGTCCGACCAAGGTGACCATAGATGTCTGTCCTAAGTGTAGTAGAGGATTTCGAGATCCAGTGTCCCTTGTGGAGCACGTTGAGAGGGATCATGGTGGTAGTTCAAGAGCGTAG 906 0.4437 MGTPEFPDLGKHCAVQDCKLIDFLPFTCDRCDQVYCLEHRSYIKHQCQKADKLDVTVVICPLCAKGVRLVPDQDPNITWENHVNTDCDPSNYERAVKKKKCPAPGCREILVFSNTIKCRDCLIDHCLKHRFGPDHKCPGPKTLDTSFSFMSLLSKSRKEESKPNPPSSTTSSSKWASSFLNAASNIRASAEAGMSKLGTEINQAWQTARDGMGQSGSSNSSNGHGNGQVEVEQCPQCGAKFSSVTMLVDHVQKVHERSSRNRSRGPTKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1305 301 MobiDBLite consensus disorder prediction 209 230 - -
Sto8g1305 301 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Sto8g1305 301 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Sto8g1305 301 Pfam Zinc finger, C2H2 type 273 295 IPR013087 -
Sto8g1305 301 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Sto8g1305 301 SMART c2h2final6 232 255 IPR013087 -
Sto8g1305 301 SMART c2h2final6 272 295 IPR013087 -
Sto8g1305 301 ProSitePatterns Zinc finger C2H2 type domain signature. 234 255 IPR013087 -
Sto8g1305 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 300 IPR013087 -
Sto8g1305 301 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Sto8g1305 301 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 301 - -
Sto8g1305 301 Gene3D - 81 150 IPR035896 -
Sto8g1305 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 260 IPR013087 -
Sto8g1305 301 MobiDBLite consensus disorder prediction 209 229 - -
Sto8g1305 301 SUPERFAMILY beta-beta-alpha zinc fingers 233 291 IPR036236 -
Sto8g1305 301 Pfam zinc-finger C2H2-type 233 255 IPR041697 -
Sto8g1305 301 MobiDBLite consensus disorder prediction 154 175 - -
Sto8g1305 301 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Sto8g1305 301 Gene3D Classic Zinc Finger 204 298 - -
Sto8g1305 301 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 301 - -
Sto8g1305 301 ProSitePatterns Zinc finger C2H2 type domain signature. 274 295 IPR013087 -
Sto8g1305 301 Gene3D - 2 57 IPR035896 -
Sto8g1305 301 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Sto8g1305 301 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Sto8g1305 301 SUPERFAMILY AN1-like Zinc finger 56 141 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1305 Sto-Chr8 8248493 8251186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1305 1 301 C2H2 Transcription Factor Family AT2G41835 63.036 7.02e-126 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g1305 zf-AN1 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1305 - - gmx:100786272 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1305 8 8248493 8251186 Sto13g2856 13 33872803 33874369 CCT
Sto8g1305 8 8248493 8251186 Sto8g1305 8 8248493 8251186 ECH