Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1304 ATGGCTGAACGTGGCGGCGGAGAGCGTGGTTTTGGCCGTGGATTTGGCGGCCGTGGACGCGGTGACCGTGGGCGTGGTGGCCGCCGCAGAGCCGGTGGTCGCCGCGAAGAGGAGGAAAAATGGGTTCCGGTGACAAAACTTGGCCGTCTCGTCAAGGAGGGAAGAATCCGCAGCCTTGAACAGATCTATCTTCATTCTCTCCCAATCAAGGAGCACCAAATTGTTGATACCTTGGTTGGTCCTAGTCTCAAGGATGAGGTCATGAAAATCATGCCCGTCCAGAAGCAGACCCGGGCCGGACAGAGAACCAGGTTCAAGGCATTCGTCGTCGTTGGTGACGGAAACGGTCACGTGGGTCTCGGTGTCAAGTGTAGCAAGGAGGTGGCCACGGCCATTCGTGTCACTGTGCGTATGGTTCCTGCTCCTCGTGGTGCTGGAATCGTTGCTGCTAGGGTGCCCAAGAAGGTGTTGCAATTTGCAGGAATCGAGGATGTCTTCACTTCTTCAAGAGGCTCTACTAAGACTCTTGGAAATTTCGTCAAGGCTACTTTTGATTGTTTGATGAAATCCTACGGTTTCCTAACACCTGAATTCTGGAAGGAGACTCGCTTTACCAAATCTCCATTCCAAGAGTACACAGATCTGTTGGCAAAACCCACTGGAAAGGCACTAATCCTTGAGGAGGAAAGAGTTGAAGCTTGA 702 0.5271 MAERGGGERGFGRGFGGRGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKSYGFLTPEFWKETRFTKSPFQEYTDLLAKPTGKALILEEERVEA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1304 233 SUPERFAMILY Ribosomal protein S5 domain 2-like 132 201 IPR020568 -
Sto8g1304 233 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Sto8g1304 233 PANTHER RIBOSOMAL S SUBUNIT 134 231 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto8g1304 233 PANTHER RIBOSOMAL S SUBUNIT 1 133 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto8g1304 233 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 133 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto8g1304 233 SUPERFAMILY dsRNA-binding domain-like 79 134 - -
Sto8g1304 233 MobiDBLite consensus disorder prediction 1 38 - -
Sto8g1304 233 Pfam Ribosomal protein S5, N-terminal domain 83 136 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto8g1304 233 Gene3D - 40 139 - -
Sto8g1304 233 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 133 - -
Sto8g1304 233 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 134 231 - -
Sto8g1304 233 Pfam Ribosomal protein S5, C-terminal domain 133 201 IPR005324 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1304 Sto-Chr8 8243828 8245577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1304 37 221 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 73.543 4.77e-114 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1304 K02981 - gmx:100797105 372.474