Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1295 ATGCAACCGAAATTGAACTCTGCACACCATTCTGAATCAGATATATGCAGCAATAAACTATATACAACCTGTTCTCAAGCTTGGTGGAATGGCATAGGGCATGATGCCTTCACTATGGATATGACCGGGGAAGGCAAAATGAATTCTTTTGTGCCAAAAGACACGGATGGTAGTTTTGGGAACCAGACCAGTAAATCACAAGCAAAGGCTCTGCTGACCGAAGGGAAGGAGGCTACCAAAGAGAAAGGCACTTTTCCTCTGATAGTGCTTGCACTAGCAGATGGAGAAATGAATGAAGAACATCAACCAAAGCAAATTGCTGTCCCTAGTATGCCTTCGACAGTAAATGAATTTTTTGCACAACCTACACAATTGGAGCTTGTTGGACACTCAATTGCATGTACATCTTACCCTTATTCAGATCCACATTATGGAGGAGTAATCTCTGGTTATGGACCTCAGCCTTTGGTACATCCCCATGGATTTGGATTGCAATCTGCTAGAATGGTGTTACCACTGGAAATGGAAGAGGAACCTGTCTATGTTAATGCAAAGCAGTACCATGGAATTTTGAGGCGTAGGCAATCGCGTGCCAAGGCTGAGCTAGAGAAGAAGCTGATAAAAGTGAGGAAGCCATACCTTCACGAGTCCCGACATTTGCATGCCATGAGAAGAGCAAGAGGATGTGGAGGCCGTTTTCTGACCACAAAGAAGTCCGATGGTACTGCTTCAAAGGCAGCAACCAGCAAGAAGGATACTGTTAATTCTGACCACAATATGGTGCCTCCCAACTTGTCTGGCATTGATGTTTCGACTTCTGCTCCCCAACCAGAGAGGAACTCCAGTTCCAATGGCAACGTGCACTATTCTCACCTTCAGGGATTTGAGTTATCTGGTTTTCAACCTCTCTCAGCTGATAGAGGAAACCAAGGAGACTTCTCTGGGGTTCGCAGGGCCCTGACCATAAAATAA 972 0.4516 MQPKLNSAHHSESDICSNKLYTTCSQAWWNGIGHDAFTMDMTGEGKMNSFVPKDTDGSFGNQTSKSQAKALLTEGKEATKEKGTFPLIVLALADGEMNEEHQPKQIAVPSMPSTVNEFFAQPTQLELVGHSIACTSYPYSDPHYGGVISGYGPQPLVHPHGFGLQSARMVLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHLHAMRRARGCGGRFLTTKKSDGTASKAATSKKDTVNSDHNMVPPNLSGIDVSTSAPQPERNSSSNGNVHYSHLQGFELSGFQPLSADRGNQGDFSGVRRALTIK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1295 323 MobiDBLite consensus disorder prediction 301 323 - -
Sto8g1295 323 SMART cbf3 175 236 IPR001289 GO:0003700|GO:0006355
Sto8g1295 323 Gene3D - 176 237 - -
Sto8g1295 323 PRINTS CCAAT-binding transcription factor subunit B signature 179 201 IPR001289 GO:0003700|GO:0006355
Sto8g1295 323 PRINTS CCAAT-binding transcription factor subunit B signature 210 233 IPR001289 GO:0003700|GO:0006355
Sto8g1295 323 ProSitePatterns NF-YA/HAP2 subunit signature. 181 201 IPR018362 GO:0003677|GO:0016602
Sto8g1295 323 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 63 287 - -
Sto8g1295 323 MobiDBLite consensus disorder prediction 237 289 - -
Sto8g1295 323 ProSiteProfiles NF-YA/HAP2 family profile. 176 236 IPR001289 GO:0003700|GO:0006355
Sto8g1295 323 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 63 287 IPR001289 GO:0003700|GO:0006355
Sto8g1295 323 MobiDBLite consensus disorder prediction 227 289 - -
Sto8g1295 323 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 178 233 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1295 Sto-Chr8 8166901 8171241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1295 126 250 CCAAT-HAP2 Transcription Factor Family AT5G12840 60.800 1.91e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto8g1295 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1295 K08064 - tcc:18598988 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1295 8 8166901 8171241 Sto8g1295 8 8166901 8171241 ECH