Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1292 ATGAATCACTTGAATATTGAGACTGAAGATTCTTTTGCGAGCTTGCTTGAGCTTGCAGCTAATAATGATATTGTGGGTTTTCAACGATTGATTGAGTGTGATCCATCCTGTGTTGATGAGGTTGGACTATGGTATGGTCGTGGAAAGGGTTCAAAGCTGATGGTCAATGAGCAGAGAACACCTTTGATGGTTGCTGCTACTTATGGTAGCATTGGTGTCATGAAACTGATTCTATCACTATCTAATGCTGACATTAATCGACCATGTGGCCTTGACAAGAGCACTGCCCTTCATTGTGCAGCATCAGGTGGGGCTGCTAATGTTGTTGATGTTGTAAAACTGCTTTTATCGGCAGGTGCTGATCCAAATTCTGTGGATGCCAATGGTCATCATCCAGTtgatgttattgttgttcctccCAAGCTTGACCATGTTAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGGCTCCATGGCAGGGTTTAATCTTAGGGTTAAGACAACTACATCAAATGCAGATTCTCCACCTTTATCAACTTCATCAGAGAATGAGTCTCCATCTTCTGCACCAGATATCCAGTTGAAGTTAAAGTCAAATGATGTCCATGGTTCTTCTGCATTAGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCAGACATCAAGAACGGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGTGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTCCATCCTGGAGAGAATGCCCGAAGAAGGGACCCGAGAAAGTTCCATTATAGCTGTGTTCCTTGTCCTGATTTTCGGAAGGGGGCTTGCCGACGTGGTGATATGTGTGAATATGCACATGGAGTTTTTGAGTGCTGGTTGCATCCAGCCCAATATCGAACCCGTCTTTGCAAGGATGGGACAAGTTGCTCTAGAAGAGTTTGCTTCTTTGCTCATCTTGCTGAGGAGCTCCGGCCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGCTCAAGTATGTCTGCCATGGATTTTGCTGCAGCAATGAATCTCTTGCCTGGCTCCCCTTCCTCAATGTCTGTCATGTCTCCATCACCATTCACTCCACCCATGTCTCCATCTGCCAATGGCATGTCACACTCTTCCGTTGCCTGGCCACAGCCTAATGTCCCAGCTTTGCATTTGCCAGGAAATAATCTTCATTCCAGTAATTTGAGATCTTCACTCAATGCTAGAGATCTTCCTGTGGAAGATTTTGATTTGTTGCCTGACTATGATGTTCAGCAACAGCAGCTTCTTAATGAGTTGTCTTGTCTTTCTCAACAACCTATGAATTCTAATAGCATAAATCGCTCGGTTCGTATGAAGACCTTGACCCCCTCAAACCTCGATGATCTTTTTTCTGCTGAGAACTCCTCTCCTCGGTTTGCAGATCCAGCATTGTCCTCACCTGTTTACTCCCCAACGCATAAGTCAGCTGTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTATCACCTGTGAATACAAAATTCCCTTCAAAGAATGTTGAGCATCCATTATTGCAGGCCTCTTTTGGGGTTCAGACATCAGGAAGAATGTCTCCACGCAACGTGGAACCTATTTCACCATTGAGCTCCAGAGTTTCTATGCTAGCTCAACGTGATAAACAACAACAATTTCGTAGCCTTAGCTCTCGCGAACTAGGCTCCAACTCTGCTGCTGCTGTTGCTGGTTCTTCTATCAATTCTTGGTCAAAATGGGGGTCCCCCAATGGTAGGTTGGATTGGGCTGTCAATCCAGATGAATTGGGTAAGTTTCGTAGGTCATCTTCATTTGAGCTTGGGAACAATGGTGAGGAGCCTGATTTGTCATGGGTGCAGTCTCTTGTCAAAGAATCTCCAACTGAGATTAAAGATTTGAAAGAGGGATCAAATATGAGCTCCCAAATTGAAGCTGTTGATAATGCTGTACTGGGAGCATGGCTTGACCAATTACGGCTTGATCAAAACGGAAATGAGTTTTGCTGA 2061 0.4357 MNHLNIETEDSFASLLELAANNDIVGFQRLIECDPSCVDEVGLWYGRGKGSKLMVNEQRTPLMVAATYGSIGVMKLILSLSNADINRPCGLDKSTALHCAASGGAANVVDVVKLLLSAGADPNSVDANGHHPVDVIVVPPKLDHVKNSLEELLQTDGSMAGFNLRVKTTTSNADSPPLSTSSENESPSSAPDIQLKLKSNDVHGSSALEKKEYPVDPSLPDIKNGIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHLAEELRPLYVSTGSAVPSPRSSMSAMDFAAAMNLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGNNLHSSNLRSSLNARDLPVEDFDLLPDYDVQQQQLLNELSCLSQQPMNSNSINRSVRMKTLTPSNLDDLFSAENSSPRFADPALSSPVYSPTHKSAVLNQFQQQQSLLSPVNTKFPSKNVEHPLLQASFGVQTSGRMSPRNVEPISPLSSRVSMLAQRDKQQQFRSLSSRELGSNSAAAVAGSSINSWSKWGSPNGRLDWAVNPDELGKFRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKDLKEGSNMSSQIEAVDNAVLGAWLDQLRLDQNGNEFC 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1292 686 MobiDBLite consensus disorder prediction 168 194 - -
Sto8g1292 686 PRINTS Ankyrin repeat signature 93 108 IPR002110 GO:0005515
Sto8g1292 686 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Sto8g1292 686 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Sto8g1292 686 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Sto8g1292 686 PANTHER UNKEMPT FAMILY MEMBER 1 681 IPR045234 -
Sto8g1292 686 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 681 - -
Sto8g1292 686 SMART ANK_2a 57 87 IPR002110 GO:0005515
Sto8g1292 686 SMART ANK_2a 92 124 IPR002110 GO:0005515
Sto8g1292 686 Gene3D - 1 188 IPR036770 -
Sto8g1292 686 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Sto8g1292 686 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Sto8g1292 686 Gene3D - 271 334 - -
Sto8g1292 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Sto8g1292 686 Pfam Ankyrin repeats (3 copies) 28 126 IPR002110 GO:0005515
Sto8g1292 686 SUPERFAMILY Ankyrin repeat 11 137 IPR036770 -
Sto8g1292 686 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1292 Sto-Chr8 8133083 8135143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1292 7 680 C2H2 Transcription Factor Family AT5G12850 52.489 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto8g1292 Ank_2 5.1e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1292 - - ccaj:109796653 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1292 8 8133083 8135143 Sto8g1292 8 8133083 8135143 ECH