Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1289 ATGCTGCAAATTCTGTTCGCGGTGGCTTTCTCCGCCGTGCCTCTCACCCTCTACGTGCCTCCGATCCGAAGCTTCAATCTCTTCGTTCAGACCGTTGAAGACTTTTTGCGACAAACCGCCGTCCACGCCATTCGAGCCTATCCTCGATTTAGGCTCGCTTTCTCTCGCATCTTCAGCTCCATCGTCGGCGTGGCATCCAGAAAGTCTTCCTTAAAGCCATGGAAGAAAGGACCTACAAGAGGAAAAGGTGGGCCTCAGAATGCTTCGTGCGAGTATCGAGGCGTTCGTCAGAGAACATGGGGGAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAAAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCAGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGACCAGATGCTTACCTTAATCTTCCCCACCTTCAATCCACCTCTAGTTCTTCTCCTATCAAATCTCAAAAGTTCAAATGGTTACCTTCCAAGAGTTATATTTCAATGTTCCCTTCTTCTGCATTGCTCAATGTTAATGCCCAACCTAGTGTTCATGTAATCCATCAGAGGCTACAACAGCTTAAGCAGAATGGTGTTCTAAGTCAAACTCCTTCGAGTTCATCCGGTGATCCCAAGGCCGAGCTCCCGAATATTATAGGCTGCAAACATAGTACAGAAAATCCTCTAAAGGAAAAAGATGATGAGACATCATCAGAAAGGATGCTTGGAGATATTCAGGAGAAACCCCAGATTGATCTCCATGAGTTTCTTCAGCAGCTGGGAATTCTGAAAGATGAAAAACAGTCAGAAAGAACTGATAGCTCAGGGAGTTCCAGAGAGCCTGAAACTTTATCCAGAGATTATAGTGATCAACTTGGAGAATATTCTGACATGAGTGTTAACTGGGAGGAACTCATAGAGATGCATGGAATTGCTGATAATCAGGGATCAAAAGCAACCCAATTTCAAGCATATGAGATAAATGAAGAGCTTACTTTCTCCActtcaatttggaacttctaa 1041 0.4438 MLQILFAVAFSAVPLTLYVPPIRSFNLFVQTVEDFLRQTAVHAIRAYPRFRLAFSRIFSSIVGVASRKSSLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQSTSSSSPIKSQKFKWLPSKSYISMFPSSALLNVNAQPSVHVIHQRLQQLKQNGVLSQTPSSSSGDPKAELPNIIGCKHSTENPLKEKDDETSSERMLGDIQEKPQIDLHEFLQQLGILKDEKQSERTDSSGSSREPETLSRDYSDQLGEYSDMSVNWEELIEMHGIADNQGSKATQFQAYEINEELTFSTSIWNF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1289 346 MobiDBLite consensus disorder prediction 204 254 - -
Sto8g1289 346 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Sto8g1289 346 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Sto8g1289 346 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Sto8g1289 346 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Sto8g1289 346 MobiDBLite consensus disorder prediction 270 298 - -
Sto8g1289 346 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Sto8g1289 346 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 66 343 - -
Sto8g1289 346 MobiDBLite consensus disorder prediction 204 218 - -
Sto8g1289 346 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Sto8g1289 346 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
Sto8g1289 346 CDD AP2 90 150 IPR001471 GO:0003700|GO:0006355
Sto8g1289 346 MobiDBLite consensus disorder prediction 231 254 - -
Sto8g1289 346 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 66 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1289 Sto-Chr8 8104067 8108708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1289 67 346 AP2-EREBP Transcription Factor Family AT3G57600 52.482 8.89e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto8g1289 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1289 - - gmx:100801311 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1289 8 8104067 8108708 Sto13g2869 13 33962330 33965636 CCT
Sto8g1289 8 8104067 8108708 Sto8g1289 8 8104067 8108708 ECH