Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1271 ATGGAGCCAACTACAGCAGGTCTTCCTGGATCCAGTCTCACTGTTAGCGAACACGATCAGACCGCACTTGAATCCATTCAATTCAACGAGGAAATCCAGCGAATCATAGCCCCTGCCCCGGAAAACACAAGCTCCTTCACCGCGCTTCTCGAACTCCCCTCAACGCAAGCCATGGAGCTCCTTCACTCCACCGCTGCGGCCAGCGCCTCCGGAGAACCCTTATGCGATATCCACGATCAGAAACCACCCCATCTATTCCACTCTCTCACTCGCAATCTAACCTCCCCTTCTGACACTGCTTTGATCGAACGCGCCGCCAAGTTTTCCGTGTTTGCTGAAGAGAACTCGCCACCGGATGAGGAGGCCAGCTTGGCTCCACCGCCTAATTCGGGTGCAAATTTGAATAGAGTGAAGAATGAACCTCCAGAAACCGATTCGAATCCTAGCTCAACCAAGGAGTTCGTTTCTGATCCTGCAATTGAGAACGCGAATGATAGGGCCGCAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGGGTCCTCAAAGAAGAGTAAAAGCGTCGCCGACGAGACATCCGGTGAAGTTGAGAAACTTCCCTACGTTCATGTGCGAGCTCGTCGTGGTCAAGCTACAGACAGCCATAGCTTAGCAGAAAGGGCCAGGAGAGAGAAGATAAATGCTCGTATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAACAAGATTTCAGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTCCAATCCCTTCAACGTCAAGTGGAGTTCTTATCAATGAAACTGGCAGCAGTTAACCCCAGAATTGATTTCAACCTTGACAGCATATTGGCTACAGAAGGTACTTCTCAAGTGGACAGTAACTTTCCCAGCATGGTTACGCCTCTAATGTGGCCAGAAGTCCCAGTCAACGGAAACAGACAGCAATATCAAGAACAATGGCGATTTGATGCATTTAACCAACCAATTTGGGGGAGGGAAGTAGAGAATCATAATTTCATGACCCCAGAAAATTCTATCTTGAGTTATGACTCGTCAGCAAATTCAGGTAGATCAGAGTTAAACTATTACTGCTTATGTCTCCCCCCTAAAGACAAGTTCCACTATACTAATTTTATGTTTGAGCTTGTCATGGTTCTTGCTGCAATTGGCATTGGACTCCATAAATAA 1194 0.4765 MEPTTAGLPGSSLTVSEHDQTALESIQFNEEIQRIIAPAPENTSSFTALLELPSTQAMELLHSTAAASASGEPLCDIHDQKPPHLFHSLTRNLTSPSDTALIERAAKFSVFAEENSPPDEEASLAPPPNSGANLNRVKNEPPETDSNPSSTKEFVSDPAIENANDRAAKRKEREKKVKGSSKKSKSVADETSGEVEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFNLDSILATEGTSQVDSNFPSMVTPLMWPEVPVNGNRQQYQEQWRFDAFNQPIWGREVENHNFMTPENSILSYDSSANSGRSELNYYCLCLPPKDKFHYTNFMFELVMVLAAIGIGLHK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1271 397 CDD bHLH_AtBPE_like 199 284 - -
Sto8g1271 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 278 IPR036638 GO:0046983
Sto8g1271 397 SMART finulus 215 265 IPR011598 GO:0046983
Sto8g1271 397 Coils Coil 249 269 - -
Sto8g1271 397 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 359 IPR024097 GO:0006355
Sto8g1271 397 MobiDBLite consensus disorder prediction 113 194 - -
Sto8g1271 397 Pfam Helix-loop-helix DNA-binding domain 213 260 IPR011598 GO:0046983
Sto8g1271 397 Gene3D - 206 279 IPR036638 GO:0046983
Sto8g1271 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Sto8g1271 397 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 19 359 - -
Sto8g1271 397 MobiDBLite consensus disorder prediction 163 194 - -
Sto8g1271 397 MobiDBLite consensus disorder prediction 128 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1271 Sto-Chr8 7988338 7993719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1271 22 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 56.456 6.24e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g1271 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1271 - - gsj:114400298 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1271 8 7988338 7993719 Sto13g2883 13 34050487 34058807 CCT
Sto8g1271 8 7988338 7993719 Sto8g1271 8 7988338 7993719 ECH