Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1267 ATGGATTCCAATTCCCTTCCCAATTCTGGCTTACTTCGCTATCGCTCTGCTCCAACTTCTCTTCTTTCCAATTTCACGCAACCCCTACTTCATTCCCATGTCAATAAGCCCAATAACACTCCATGGGATACTTCTTCTCAATCCCACACATTGATTTCTAGATTCCTCAATAACAACGATACGGATTCCCCATGTTTCCAAGAATTCGAAGGCAAAGCATCTACTAAAGCGCCGCCGCCACCACCCGCCGAGGCAGCTGCTCTGAACCGTATGAATTCCCATCAAccctataataataataatgataatgctTTGCCGCCTCACTATCCCATTCCCGCGACGCTTAATCATTCCATTACTGCAAGTTCCGCCATGGATTCTTCCTATGGACTTGCGGCTTCATTGGGAATGGATCACCAAACGCAATCCAAAACCTTCACTCCCAATCTTCTCAGGCAAAGTAGCTCCCCTGCTGGCTTTTTCTCCGACATTTCCTTTCACAATGGTGAAAGTTCTGAGAATTATTTGCATATTACAGGGTATGCTAGCATGAAAGGTGTTGGAAACTATGGTGGGGCTAATAGGAATGGTGGTGAAGTGAGCAGATTGAAGAATCAGTTTAGCTTCTCGTCAAGAAATGGTTCTTCTATGGGAATGTTGTCACAAATCTCTGAGATAGAGAGTGAGAGCATTGGAGCGACTAGCCCTGATGATGGGAAGCTCGGATCTAGCAATGGTTATGGCCCTGGATTTCCATATAGTTCCTGGAATGACACGTCCCATCTCTCAGAAAATCTCAGTGGCCTCAAAAGAGAGCAAAGTGACAGTGAAAAGTTATTTTCTGATGCCCAGAATGGACATCTAGGAAATGGGGTTCATATGCTATCTCATCACTTGAGTTTGCCAAAACCTTCAGCAGATATGAGTGCTATGGAGAAGTTGCTTCAATTGCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGTTGTGCTACTCATCCTCGAAGCATTGCAGAGAGGGTAAGAAGAACTCGGATCAGTGAACGAATGAGAAAATTACAAGAGCTTGTCCCACACATGGACAAGCAAACAAACACAGCGGATATGTTGGATTTGGCTGTTGAGTACATTAAAGATCTACAGAAACAATTCAAGAGTCTGAGTGAAAAACGGGCAAACTGCAAATGTATGAGCATGCAGCAGAAGGCGGATACAGATAAAGTTGTTTGA 1233 0.4339 MDSNSLPNSGLLRYRSAPTSLLSNFTQPLLHSHVNKPNNTPWDTSSQSHTLISRFLNNNDTDSPCFQEFEGKASTKAPPPPPAEAAALNRMNSHQPYNNNNDNALPPHYPIPATLNHSITASSAMDSSYGLAASLGMDHQTQSKTFTPNLLRQSSSPAGFFSDISFHNGESSENYLHITGYASMKGVGNYGGANRNGGEVSRLKNQFSFSSRNGSSMGMLSQISEIESESIGATSPDDGKLGSSNGYGPGFPYSSWNDTSHLSENLSGLKREQSDSEKLFSDAQNGHLGNGVHMLSHHLSLPKPSADMSAMEKLLQLPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPHMDKQTNTADMLDLAVEYIKDLQKQFKSLSEKRANCKCMSMQQKADTDKVV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1267 410 Pfam Helix-loop-helix DNA-binding domain 336 382 IPR011598 GO:0046983
Sto8g1267 410 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 401 - -
Sto8g1267 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 381 IPR011598 GO:0046983
Sto8g1267 410 Gene3D - 332 407 IPR036638 GO:0046983
Sto8g1267 410 SMART finulus 337 387 IPR011598 GO:0046983
Sto8g1267 410 MobiDBLite consensus disorder prediction 266 285 - -
Sto8g1267 410 Coils Coil 378 398 - -
Sto8g1267 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 399 IPR036638 GO:0046983
Sto8g1267 410 PANTHER TRANSCRIPTION FACTOR BHLH130 7 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1267 Sto-Chr8 7961010 7962818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1267 1 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.192 2.27e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g1267 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1267 - - jre:109020257 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1267 8 7961010 7962818 Sto8g1267 8 7961010 7962818 ECH
Sto8g1267 8 7961010 7962818 Sto12g0093 12 617290 619094 ECH
Sto8g1267 8 7961010 7962818 Sto7g1644 7 21389610 21394326 ECH