Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1254 aTGATCGATCTATCAGATGCTGCAATGTTTGATGTGGAATATGGGCGATGGGTGGAGGAGCACCATCGGCTAGTGTGCGAACTAAGGGCAGCAGTTCAAGAACACCTTCCAGAGAACGAGCTTCGGTTATTCGTGAACAACTGCCTTTCTCACTTTGATCAAATTATGAACCTTAAGAGCATTGTGTGCAAGAGTGACGTCTTCCACCTTTATTCTGGCATGTGGAAGACACCAGCTGAACGTTGCTTCATGTGGATGGGTGGATTCAGGCCCTCTCAAATCCTCAAGataattttgaatcaaatagagccactgacggagcaacAACTACTTGGTATCTGTGGGTTGCAACAATCCACACAAGAGGGAGAAGATGCTCTCACCGCAGGCCTTGAAACTCTGAACCATTCTGTCACTGACACCATAACAGCCGACTCTTTGATCTCTTCCCCAAACATGGCTAACTACATGGGACAGATGGCGGTGGCCGTCAACAAGCTCACCTCTCTCGACCATTTCGTCgcacaggtatatatatatatatatatatgcacttcCACTGCCTTCTAG 570 0.4246 MIDLSDAAMFDVEYGRWVEEHHRLVCELRAAVQEHLPENELRLFVNNCLSHFDQIMNLKSIVCKSDVFHLYSGMWKTPAERCFMWMGGFRPSQILKIILNQIEPLTEQQLLGICGLQQSTQEGEDALTAGLETLNHSVTDTITADSLISSPNMANYMGQMAVAVNKLTSLDHFVAQVYIYIYICTSTAF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1254 189 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 5 176 - -
Sto8g1254 189 Pfam Seed dormancy control 25 99 IPR025422 GO:0006351|GO:0043565
Sto8g1254 189 ProSiteProfiles DOG1 domain profile. 7 189 IPR025422 GO:0006351|GO:0043565
Sto8g1254 189 PANTHER TRANSCRIPTION FACTOR TGA9 5 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1254 Sto-Chr8 7917415 7918571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1254 5 177 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 61.798 5.88e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1254 K14431 - rcu:8277515 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1254 8 7917415 7918571 Sto13g2898 13 34130192 34135869 CCT
Sto8g1254 8 7917415 7918571 Sto8g1254 8 7917415 7918571 ECH