Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1239 ATGGATGCTCGTAAGAGAGGGAGGCCTGAAGCTAGTTTCAACATTAATGGCGGCTTCAAGAAGTCCAAACAAGAAATGGAGTTCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCTTTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATACTGTTGCTCAGATGATGAATCTAGCAGCTGCTGCTCCTGCGGCATCAAGAAATATTGCAGCCCCAGCTCCAATTCATAATGGTGGGTCCACTCCTGCTGCTAAAACCCGGATTTGCAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGTCATTTTGCGCACGGTGAATGGGAACTTGGCAAGTCTGTTACTCCATCAGTAGATGATCATCGTGCTATGGGACCTATTGCAGGCCGTATTGTCCCCGGTCGAATGGAGCCCCTACCAGGCCCTGCTGCTAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCATCCCTGGCTGGAGCAATCATAGGAAAGGGTGGTGTGAACTCCAAGCAGATCTGTCGCCAAACCGGAGCCAAACTATCAATTCGGGATCATGAGTCAGATCCAAATCTTAGAAATATTGAACTTGAGGGAAGTTTTGAACAAATTAAGGAAGCAAGTAACATGGTGAAAGATTTGCTTGCAACCATCTCAATGTCTGCACCACCAAAAATCCCTGGCATTCCCGGAGCCGCCCCAGCCCCTACTGGAAGCAATTATAAGACCAAGTTGTGTGAGAACTTTACCAAAGGATCTTGCACCTTTGGAGATAGATGTCACTTTGCACATGGGGCTGCTGAATTGCGCAAGTCAGTAGTATGA 888 0.473 MDARKRGRPEASFNINGGFKKSKQEMEFLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNTVAQMMNLAAAAPAASRNIAAPAPIHNGGSTPAAKTRICNKFNSAEGCKFGDKCHFAHGEWELGKSVTPSVDDHRAMGPIAGRIVPGRMEPLPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKDLLATISMSAPPKIPGIPGAAPAPTGSNYKTKLCENFTKGSCTFGDRCHFAHGAAELRKSVV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1239 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Sto8g1239 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Sto8g1239 295 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Sto8g1239 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Sto8g1239 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Sto8g1239 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Sto8g1239 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Sto8g1239 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Sto8g1239 295 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Sto8g1239 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Sto8g1239 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 293 - -
Sto8g1239 295 SUPERFAMILY CCCH zinc finger 99 129 IPR036855 GO:0046872
Sto8g1239 295 Gene3D - 96 131 - -
Sto8g1239 295 Gene3D - 260 293 - -
Sto8g1239 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Sto8g1239 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 293 - -
Sto8g1239 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Sto8g1239 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 238 IPR036612 GO:0003723
Sto8g1239 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Sto8g1239 295 SMART kh_6 167 237 IPR004087 GO:0003676
Sto8g1239 295 CDD KH-I 170 233 - -
Sto8g1239 295 Pfam KH domain 171 233 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1239 Sto-Chr8 7820074 7825070 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto8g1239 KH_1 2.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1239 - - gmx:100803981 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1239 8 7820074 7825070 Sto13g2913 13 34261082 34281148 CCT
Sto8g1239 8 7820074 7825070 Sto8g1239 8 7820074 7825070 ECH