Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1223 ATGGAGGAAGAGTCATCCGATGCCATGAACCTTGATTTGAATCTGGGTCCTGGTCCAGAGCCAGCGGGTGGGTCCATAACCAATGAATCTGTGAACATAGGGGATTGGTTTGAAGAGCCTCTTCATAGAGTTAGCGAAGCAGTAAGACATAGGGCTCGACAAAGGTGGAGATGGCGGCATCCTCATATTAACCCACCTGAGGCCCATCGGAATATTCTTCTTTCACCTGAAGCCCACAATATCTCTGTGGCATTAAATCATTTGTTGGTCAGCCCTGGTAATGGAAGTGCATTACAGGCTGGTGAAGGTAGTGTGGCAGCTGAAGAGAGAATGGAAGAGGCACCGAAAGCTTGTGAAAATAACAATGGTGTTACAGAGGATGAGGCATCAGATAAGAAGGATGATGTTGAAAAGGCTAGTGGCAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATCGCTGGCTGCATGTCCATTCGGATGCCAAGGAATGCCCAGTTTGCAAGGGAGaggttaattttaaaaatgtcaCCCCCATATATGGGCGTGGGAACAATGTCCATGAACCCGAGGAGGATTCTACTCTTAAAATCCCTCTCAGGCCCCATGCTAGGCGTGTTGAAAGCCTGAGACAAACCCTTCACAGAAATGCATTGGCATTCCCAGTGGAGGAGATGATTCGGCGTCTTGGAAATAGAATTGATCTCTCTCGAGATTTAGTTCAACCACATGAGCCTGACAATGCGCGCGAAACAGCAGACAGAACTAGTACTTTGTTAAACAGGTTTTTGACATCTCGAGCAATAAGGAGAGAGCATAATCACGGGGCAGCCCCAGATGATGTAGTGGATTTAGCACAAAGCAACACTGGTAGTGCTGAAGCAGGTGATAACCGCAGGTTTCAATCCATTTTACGTCGAAGAGCACATTCACATAGAACAACACTTTCATCTCTCTCATCAGCACTGAGTTCTGCTGAAAGATTTGTTGAGGCATACATCCGTGGCCATTCTATAGGTAGAAACCAAGACCAACCTCCACCAGTCGATGACAGAGATTCCTTTTCTAGTGTTGCTGCTGTTATACATTCAGAGAGTCAAGTGGACACTGCTGTGGAAATTGATTCCATGGTATCATTGTCAACATCCTCTTCCAGGAGGAGAAACGACACTTCCCGAGTTTCTGATGTGGATAGTGGAGATTCTCGAGCTCCCAGGCGTAGACGTTTGAactga 1299 0.4573 MEEESSDAMNLDLNLGPGPEPAGGSITNESVNIGDWFEEPLHRVSEAVRHRARQRWRWRHPHINPPEAHRNILLSPEAHNISVALNHLLVSPGNGSALQAGEGSVAAEERMEEAPKACENNNGVTEDEASDKKDDVEKASGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVNFKNVTPIYGRGNNVHEPEEDSTLKIPLRPHARRVESLRQTLHRNALAFPVEEMIRRLGNRIDLSRDLVQPHEPDNARETADRTSTLLNRFLTSRAIRREHNHGAAPDDVVDLAQSNTGSAEAGDNRRFQSILRRRAHSHRTTLSSLSSALSSAERFVEAYIRGHSIGRNQDQPPPVDDRDSFSSVAAVIHSESQVDTAVEIDSMVSLSTSSSRRRNDTSRVSDVDSGDSRAPRRRRLN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1223 432 SUPERFAMILY RING/U-box 145 202 - -
Sto8g1223 432 MobiDBLite consensus disorder prediction 358 377 - -
Sto8g1223 432 MobiDBLite consensus disorder prediction 397 432 - -
Sto8g1223 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 432 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto8g1223 432 MobiDBLite consensus disorder prediction 116 137 - -
Sto8g1223 432 CDD RING-HC_AtRMA_like 147 191 - -
Sto8g1223 432 Pfam Zinc finger, C3HC4 type (RING finger) 149 189 - -
Sto8g1223 432 SMART ring_2 149 189 IPR001841 -
Sto8g1223 432 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Sto8g1223 432 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Sto8g1223 432 MobiDBLite consensus disorder prediction 410 432 - -
Sto8g1223 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 208 IPR013083 -
Sto8g1223 432 MobiDBLite consensus disorder prediction 1 29 - -
Sto8g1223 432 PANTHER OS01G0830200 PROTEIN 18 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1223 Sto-Chr8 7737502 7738830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1223 1 423 C3H Transcription Factor Family AT3G58030 53.075 4.81e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1223 K10666 - gmx:100811099 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1223 8 7737502 7738830 Sto8g1223 8 7737502 7738830 ECH