Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1222 ATGGAGCTGGCATTGAGCTTAGGAGAAGCACCAAATAAGGCCTTCTCTTTTGTGGAGAAGCTCACAAAAATGCCCAACAATGAGCTTCCTCCTGCCTTGTGCATACCCACTGCTTTCACTTCCATAAACTCTCAACACAATCAGCAGGCAAGGACTTCATCAGATCCGCCCATTCAGCTCAATCTCCTTCCTCTCAACCCCCATCCACCAATTCCTTGCCTCTCCCATGCATCTTTGGGTGGTGAAGGGGTTTCAACAGAAGCAGGGGCGAGGGTGTTGGATGTGAACCGGTTGCCGGCGGCGGGAGAGGAGGGGGAGGACGCCGCAGCACTCTCTTCCCCAAACAGTGGAGTCTGCTCATTTCAGATGGAATTCTGTTCAGTGAGAAATAGAAACAGGAGAGAGCAGGAGGCCGCCGACAGAGGCAGCGACGACGACGAAAGCGGATCAGGTCGCAAGAAACTCAGACTCTCTAAGGAACAGTCCGCTTTCCTTGAAGACAGCTTCAAAGAGCACACCACTCTCAATCCTAAGCAGAAACTTGCTCTGGCAAAACAGTTAAATCTCCGTCCTCGTCAAGTAGAGGTTTGGTTTCAGAACAGAAGGGCCAGAACAAAGTTGAAGCAGACGGAAGTAGATTGCGAGTATTTGAAGAGATGCTGCGAGACGCTGACGGAGGAGAATAGGAGGTTACAGAAGGAGCTTCAACAACTAAGGGCATTAAAGTCATCTCAACCCTTTTACATGCACCTTCCCGCTACCACTCTCACCATGTGTCCCTCTTGCGAAAGGGTCGCTACCACCAACTCCTCCTCCGCCCCCAACAATCCTTCCCAACTCCAAGTCGCCTTGTCGCTTGGAAACCCCACAACGCCTCCCAATGGACAAGCCCATCACGCGCCTTCCTGA 909 0.5193 MELALSLGEAPNKAFSFVEKLTKMPNNELPPALCIPTAFTSINSQHNQQARTSSDPPIQLNLLPLNPHPPIPCLSHASLGGEGVSTEAGARVLDVNRLPAAGEEGEDAAALSSPNSGVCSFQMEFCSVRNRNRREQEAADRGSDDDESGSGRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQQLRALKSSQPFYMHLPATTLTMCPSCERVATTNSSSAPNNPSQLQVALSLGNPTTPPNGQAHHAPS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1222 302 Coils Coil 214 244 - -
Sto8g1222 302 ProSiteProfiles 'Homeobox' domain profile. 148 208 IPR001356 GO:0003677
Sto8g1222 302 ProSitePatterns 'Homeobox' domain signature. 183 206 IPR017970 GO:0000981|GO:0006355
Sto8g1222 302 Pfam Homeobox associated leucine zipper 208 242 IPR003106 GO:0006355|GO:0043565
Sto8g1222 302 SMART HOX_1 150 212 IPR001356 GO:0003677
Sto8g1222 302 SMART halz 208 251 IPR003106 GO:0006355|GO:0043565
Sto8g1222 302 Pfam HD-ZIP protein N terminus 84 121 IPR006712 GO:0005634
Sto8g1222 302 CDD homeodomain 152 209 IPR001356 GO:0003677
Sto8g1222 302 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 278 - -
Sto8g1222 302 MobiDBLite consensus disorder prediction 132 157 - -
Sto8g1222 302 Pfam Homeodomain 152 206 IPR001356 GO:0003677
Sto8g1222 302 Gene3D - 143 213 - -
Sto8g1222 302 PANTHER - 5 278 - -
Sto8g1222 302 MobiDBLite consensus disorder prediction 267 302 - -
Sto8g1222 302 SUPERFAMILY Homeodomain-like 149 217 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1222 Sto-Chr8 7722824 7724028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1222 144 265 Homeobox Transcription Factor Family AT4G37790 82.787 4.18e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto8g1222 Homeodomain 9.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1222 K09338 - gmx:100776113 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1222 8 7722824 7724028 Sto13g2930 13 34363746 34365461 CCT
Sto8g1222 8 7722824 7724028 Sto8g1222 8 7722824 7724028 ECH