Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1216 ATGGTTCCTGGAGGCAGTGCTTGCAAAGAAGTTCTTGAGTCTCACCTGACAACTTCAGATTATGACATAGCCAGCACAAATAGTAGTAGTAATAGTCCTCTTAGAAAGTCAAGCACTGGTTTTATAGGAAAACATGGAAGTAATTCGAAGAATGGCGTGCATGACTTACTTGAGTGCTCTGTTTGTAAAAAATTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCACACATTATGTTCAAACTGTAAGTTTGGAGTGCATAACCGCTGTCCAACTTGTCACTATGATCTTGGAAACATAAGATGTTTAGCTCTGGAGAAGGTGGCTGAATCATTGGAACTTCCTTGCAGATATCAGAATTTAGGTTGTCATGATATATTCCCCTACTATACCAAGCTTAAGCACGAGCAAAATTGTCATTTTCGTCCGTACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATTCCGACTCTTGTTGCCCACCTCAAGGATGATCACAAGGTTGACATGCACGATGGATGTACCTTCAACCATCGATATGTGAAATCAAACCCTCATGAAGTTGAAAATGCAACGTGGATGCTAACTGTTTTCAATTGTTTTGGAAGACACTTCTGCTTGCACTTTGAGGCATTCCAGATAGGTATGGCTCCAGTTTATATGGCGTTCTTACGATTCATGGGTGATGACAATGAGGCAAAGAAATTCGGGTACAGTTTGGAAGTTGGTGCAAATGGGAGAAAGCTGATATGGCAAGGGATTCCAAGGAGCATTCGTGACAGTCATAGGAAAGTTCGTGACAGTCAAGATGGGCTGATTATTCAGAGGAACCTTGCTCTTTATTTTTCTGGCGGAGATAGACAGGAGTTGAAGTTGAGGATTACTGGGCGTATTTGGAAAGAAGATTAA 924 0.4221 MVPGGSACKEVLESHLTTSDYDIASTNSSSNSPLRKSSTGFIGKHGSNSKNGVHDLLECSVCKKLMYPPIHQCPNGHTLCSNCKFGVHNRCPTCHYDLGNIRCLALEKVAESLELPCRYQNLGCHDIFPYYTKLKHEQNCHFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQIGMAPVYMAFLRFMGDDNEAKKFGYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRITGRIWKED 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1216 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 306 - -
Sto8g1216 307 CDD Sina 173 301 - -
Sto8g1216 307 SUPERFAMILY TRAF domain-like 112 304 - -
Sto8g1216 307 SUPERFAMILY RING/U-box 52 101 - -
Sto8g1216 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Sto8g1216 307 MobiDBLite consensus disorder prediction 24 43 - -
Sto8g1216 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 111 IPR013083 -
Sto8g1216 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Sto8g1216 307 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sto8g1216 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 166 IPR013083 -
Sto8g1216 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515
Sto8g1216 307 CDD RING-HC_SIAHs 57 94 - -
Sto8g1216 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1216 Sto-Chr8 7692717 7694679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1216 1 307 C3H Transcription Factor Family AT2G41980 80.130 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1216 K04506 - tcc:18599138 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1216 8 7692717 7694679 Sto8g1216 8 7692717 7694679 ECH