Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1198 ATGACAACTTCATGGGCAGATTCTGTTGACAATTCGGTCATTGGTTCTTCTGATGCCAATGCTGCTCGTCCTGCCCGCTCAACTTATGTTCCTCCACATCTCCGTAATAAGCCACCATCTTCAGAACCCCCTGTAGCATCACACTCATCTTCTTTGCCAGCTAATGATCGGGTAAATTATGGTGGGCCAACTGCTGGTTCTCGTGGGGGCGGTTCCTATAATAGGCCTGACCATGGGAGGCAAGAATATGGTTACAGTGGTCGAACTGGTGGGGGTTGGAACAATAGAGGTGGAGGATGGGACCGTGGAAGGGAGCGTGAGGTGAACCCATTTGAGGATGATGAAgctacagatcatgcttttgGTGAGCAAGAAAATACAGGCATTAACTTTGATGCTTATGATGATATCCCTGTGGACACTAGTGGGGAGAATGTGCCTCCACCTGTAAATACTTTTGCAGAAATAGACTTGGGTGAGGCATTGAATCACAATATACGGAGATGCAAGTATGTCAAACCAACTCCAGTTCAGAGGTATGCCATACCAATTTCTCTTGCAGGGCGAGATCTCATGGCTTGTGCTCAGACAGGATCGGGCAAGACAGCTGCCTTTTGCTTTCCTATTATAAGTGGAATCCTGAAAATGCAACATGTTCAAAGACCACGCATAGGAAGAACTGCTTTTCCTTTGGCACTTATCCTGTCTCCTACCCGGGAGCTTTCATGTCAGATACATGATGAGGCTAAAAAGTTCTCCTATCAAACTGGGGTCAAGGTGGTTGTTGCTTATGGAGGAGCACCAATTAACCAACAGATGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGGCGTCTGGTAGATCTGCTAGAGAGGGCAAGGGTGTCACTTCAAATGATAAGGTATTTAGCTCTTGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAACCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCTTCAAGGTTTGAGACAGACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGAGACTTGCATCAGATTTCCTTTCGAATTACGTGTTTCTGGCAGTTGGAAGGGTAGGTTCTAGTACTGATCTAATTGCTCAAAGGGTAGAATATGTCCTTGAGTCTGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAAAGAGAAAATGGAATTATTGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCGTTGGAACACTGGTTGTGTCTCAACGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAGCAGGAAAGAGAGCTAGCATTGAGGTCGTTCAAGAGTGGAAACACTCCAATTTTAGTAGCAACAGATGTTGCAGCACGCGGTCTTGATATTCCACGTGTAGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGAGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTTAATGACAATAATTTCTCGTTGGCAAAACCATTGGCTGATCTGATGCAAGAGGCTAATCAAGAAGTACCTGCCTGGCTTACACGTTTTGCAGCAAGAGCTTCCTACGGTGGTGGCAACAGAAATAGGCGCTCTGGGGGATCCCGTTTTGGTGGGCGTGATTTTAGGAGGGACGGCCAACACAATAAAGGACCAGAATACTATGGTGGCACAGGTGGCTATGGAGTTCCTGCTAGTTATGGTGGAGGGTATGGTCCTCCCGGGGTTGCAAGTGCTTGGGACTAG 1824 0.4561 MTTSWADSVDNSVIGSSDANAARPARSTYVPPHLRNKPPSSEPPVASHSSSLPANDRVNYGGPTAGSRGGGSYNRPDHGRQEYGYSGRTGGGWNNRGGGWDRGREREVNPFEDDEATDHAFGEQENTGINFDAYDDIPVDTSGENVPPPVNTFAEIDLGEALNHNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILKMQHVQRPRIGRTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQMRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPLQGLRQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIIGKQGLTLVFVETKKGADALEHWLCLNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNFSLAKPLADLMQEANQEVPAWLTRFAARASYGGGNRNRRSGGSRFGGRDFRRDGQHNKGPEYYGGTGGYGVPASYGGGYGPPGVASAWD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1198 607 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Sto8g1198 607 MobiDBLite consensus disorder prediction 42 57 - -
Sto8g1198 607 CDD SF2_C_DEAD 378 514 - -
Sto8g1198 607 Pfam DEAD/DEAH box helicase 175 355 IPR011545 GO:0003676|GO:0005524
Sto8g1198 607 MobiDBLite consensus disorder prediction 1 106 - -
Sto8g1198 607 CDD DEADc_DDX3_DDX4 152 372 IPR044763 GO:0003724|GO:0005524
Sto8g1198 607 MobiDBLite consensus disorder prediction 560 576 - -
Sto8g1198 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 544 IPR001650 -
Sto8g1198 607 MobiDBLite consensus disorder prediction 1 23 - -
Sto8g1198 607 SMART helicmild6 424 505 IPR001650 -
Sto8g1198 607 Gene3D - 369 549 IPR027417 -
Sto8g1198 607 Gene3D - 106 368 IPR027417 -
Sto8g1198 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
Sto8g1198 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 520 IPR027417 -
Sto8g1198 607 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 37 578 - -
Sto8g1198 607 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 578 - -
Sto8g1198 607 SMART ultradead3 170 381 IPR014001 -
Sto8g1198 607 MobiDBLite consensus disorder prediction 550 583 - -
Sto8g1198 607 Pfam Helicase conserved C-terminal domain 392 505 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1198 Sto-Chr8 7570217 7574660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1198 149 537 Eukaryotic Initiation Factors Gene Family AT3G19760 31.026 8.44e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1198 K11594 - gmx:100818326 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1198 8 7570217 7574660 Sto8g1198 8 7570217 7574660 ECH