Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1186 TTGAGCAGGATGGAGTCTCAGGTGAAGCATGCTGTGGTTGTTAAAGTTATGGGTCGTACTGGATCCAGAGGGCAGGTGACTCAGGTTAGAGTCAAGTTCTTGGATGATCACAACCGTTACATCATGAGGAATGTGAAAGGACCAGTTAGAGAAGGTGACATTCTCACCCTACTTGAGTCTGAGAGAGAAGCAAGGAGGCTTCGCTAG 207 0.4783 LSRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1186 68 PANTHER 40S RIBOSOMAL PROTEIN S28-1 4 68 - -
Sto8g1186 68 Pfam Ribosomal protein S28e 7 67 IPR000289 GO:0003735|GO:0005840|GO:0006412
Sto8g1186 68 ProSitePatterns Ribosomal protein S28e signature. 59 67 IPR028626 -
Sto8g1186 68 Gene3D - 1 68 IPR012340 -
Sto8g1186 68 CDD S1_S28E 9 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Sto8g1186 68 Hamap 30S ribosomal protein S28e [rps28e]. 4 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Sto8g1186 68 PANTHER 40S RIBOSOMAL PROTEIN S28 4 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Sto8g1186 68 SUPERFAMILY Nucleic acid-binding proteins 4 68 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1186 Sto-Chr8 7500841 7501047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1186 4 68 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 1.01e-36 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1186 K02979 - csv:101212501 101.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1186 8 7500841 7501047 Sto8g1186 8 7500841 7501047 ECH