Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1149 ATGAACAACGCAAACAATACGGCGTCGTCGGGGTCTGGAAACTTAAGCGGGTTCGGGTATGGATTAGTTGTATCCATGGGGATTCTGGTGATAGCCATAAGTATTATTCTGGTTTGTTTTCACTGCATCCGGAAGCGCCTTTCTACGGTGAATAACGACGGTAATAGTAATAATGTTGTTGAATATGTGCAACGCTCAGGGCTTGATGAAGCTACAATTCTGAGTTACCCAAAGCTGCTTTACTGTGAAGCCAGGCTTCAAAAATCTGAGGTCACACCCACGGCCACGTGTTGCTGTTGCTCCATATGTCTAGGCGATTACAAGGATAGTGATATGGTTCGGGTTCTACCTGATTGTGCCCACCTCTTCCACGTCAGTTGTATAGACCCTTGGTTGAGGATCCATCCCACGTGTCCTCTCTGCAGAACATCTCCAATCCCAACCCCTCTTACTCAACTCCCTCCCTTACCCACTTCCACGCCCATTTGGATCTCCTGA 498 0.4779 MNNANNTASSGSGNLSGFGYGLVVSMGILVIAISIILVCFHCIRKRLSTVNNDGNSNNVVEYVQRSGLDEATILSYPKLLYCEARLQKSEVTPTATCCCCSICLGDYKDSDMVRVLPDCAHLFHVSCIDPWLRIHPTCPLCRTSPIPTPLTQLPPLPTSTPIWIS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1149 165 SUPERFAMILY RING/U-box 78 148 - -
Sto8g1149 165 SMART ring_2 100 141 IPR001841 -
Sto8g1149 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 146 IPR013083 -
Sto8g1149 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 152 IPR045899 -
Sto8g1149 165 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 5 152 - -
Sto8g1149 165 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Sto8g1149 165 CDD RING-H2_PA-TM-RING 99 142 - -
Sto8g1149 165 Pfam Ring finger domain 100 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1149 Sto-Chr8 7307508 7308005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1149 10 149 C3H Transcription Factor Family AT5G06490 42.169 1.27e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1149 - - cit:102631067 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1149 8 7307508 7308005 Sto13g2991 13 34734202 34734723 CCT