Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1145 ATGCAAACAGTGTATTTCAAAGAGGCTGAAGGAAGTGTCCAGAATTCCGTTGGGCAGATGGCGTCTGTAACTACAGCCCCGTGGTGGAGTGCCTTGGGGTCTCAATCAATTTTTGGGGAGTCCTGTGGCCAAATAAAACCTTTTTCATTGGAGCTTCCCAACTATGTAGACCAGCTTGCTCCCACTAAGCAAGCAGGAAGAGGAGCTGAACAAGTGTTTGATAAGGGACATACCACACAGTTCTCTATCTTTCCAGaTGATTGTAAAATACCCGGTGATCCACAAAAGCCTCAGGCAGCCATATCACTTCCTGATCCTTCCACTCGTGTTGAGCTAGGATTCAGTCAGCCTATGGGCCGTATAATGCTGCCACTTAACATGACATCCGATGATGGACCCATTTACGTCAATGCTAAGCAGTACCATGGAATCATCAGACGTCGACAGTCCCGCGCAAAGGCTGTACTTCAGAATAAATTGACAAAACGTCGCAAGCCCTATATGCATGAATCAAGGCATCTTCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGTTTCTTGAACACAAGAAACATGGACAACAGTAATGAAAAAAGCGGAAGTGAAGTGAATAAAACTGGCGATGGACAATTGCAGTACAGTGGTTCTCAGAGCTCTGAGGTGCTGCAATCATCGAAGGAAACAAGTGGGAGCAGTCCACGTATGTCAGGTTCAGAGGTGACTAGCATGTATTCAAGGGGAGGTTTTAATCATGGCTTTGCCGTGAACCATCTTGGATCAGCTGTTCATCACTCTCTGGCAGACATGATGGGTGGTCATGGTGGGGGTGGCATTGTCATCCCCACCAAATGGGTTGCAGCAGCAGACCAGATGAAGAAGCTTTTGTTGCGGTTTCCTCTCATGGTTACTGTGACGAGTTTCATTGTGAGGCTTGCCCCGGCATCTGGTTTGAAGGCAAATCATTCTTGGCTCATCGAAATTGGCAAATCGTCCTTGGCTCATTTATATAGATATGTAGTACTACTGGCTTTGGCTTTTCTGTTCAGACCTGTCTTCGGCGTGTTTAGGCATGCTAATGACCGGAGAATCAATAGCCTCTACTTCACTCCCTCTTCCTTCTCAATCACCGTCAAATTCCCTCACAGACCCCTATCCCACAAACCTCTCAACCTCAATTTCAAATCACAATTTCCCACTTCCTCTCCTCTCTCGCTCTACCATCTTCCTTTGGCTTCGGCTGCCTTCGATGGATTTGAAGTAGCTCAGGACACCGCGAGCGCCCAGCAGGAGGACCCACAACCCGAACCCTATGAGAAatcagaagaagaggaagaggatgcGCCCAAGGTATCAGACTCAAACGAAGCAGGGAGGCTCTATGTGGGAAATTTGCCTTATGCATTGACTTCCTCCGAATTAGCTGAGATTTTCAGAGAGTCTGGCAATGTTGTGTCTGTGGAGATTGTATATGATCGCGTTACGGACAGAAGCAGAGGATTTGCTTTTGTGACAATGGAGAGCGCTGAAGATGCCAAAGAAGCTATTCGAATGTTTGATGGCTCCCAAATTGGAGGTAGGACTGTGAAAGTGAACTTCCCAGAAGTGCCGAAAGGAGGTGAAAGGCTGGTAATGGGACCAAAAGTAAAGAACAACTACAGAGGCTTCATAGAAAGCCCGCACAAGATATACGCTGGAAACCTTGGCTGGGGGTTGACATCACAGGGTCTGAGAGACGCATTTGCAGAGCAGCCAGGCTTCCTGAGTGCTAAGGTCATCTATGAGAGGGACACTGGAAGATCTCGAGGCTTTGGCTTCGTCTCTTTTCAAACTGCAGAGGACGTTGAGACTGCTTTGAATGCTATGAATGGTGTGgaGGTTGAAGGCCGGCCTTTGCGGCTGAATTTGGCTGCAGATAGGACATCTACATCATCTCCTTATTTGATAGAGGAAGGTGCAGAAGATAATGTTGATAGCTCGGAATTGGTTTCTAGCGTCAGCGTATGA 2007 0.4704 MQTVYFKEAEGSVQNSVGQMASVTTAPWWSALGSQSIFGESCGQIKPFSLELPNYVDQLAPTKQAGRGAEQVFDKGHTTQFSIFPDDCKIPGDPQKPQAAISLPDPSTRVELGFSQPMGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLQNKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNMDNSNEKSGSEVNKTGDGQLQYSGSQSSEVLQSSKETSGSSPRMSGSEVTSMYSRGGFNHGFAVNHLGSAVHHSLADMMGGHGGGGIVIPTKWVAAADQMKKLLLRFPLMVTVTSFIVRLAPASGLKANHSWLIEIGKSSLAHLYRYVVLLALAFLFRPVFGVFRHANDRRINSLYFTPSSFSITVKFPHRPLSHKPLNLNFKSQFPTSSPLSLYHLPLASAAFDGFEVAQDTASAQQEDPQPEPYEKSEEEEEDAPKVSDSNEAGRLYVGNLPYALTSSELAEIFRESGNVVSVEIVYDRVTDRSRGFAFVTMESAEDAKEAIRMFDGSQIGGRTVKVNFPEVPKGGERLVMGPKVKNNYRGFIESPHKIYAGNLGWGLTSQGLRDAFAEQPGFLSAKVIYERDTGRSRGFGFVSFQTAEDVETALNAMNGVEVEGRPLRLNLAADRTSTSSPYLIEEGAEDNVDSSELVSSVSV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1145 668 ProSiteProfiles NF-YA/HAP2 family profile. 130 190 IPR001289 GO:0003700|GO:0006355
Sto8g1145 668 MobiDBLite consensus disorder prediction 189 242 - -
Sto8g1145 668 CDD RRM_HP0827_like 459 535 - -
Sto8g1145 668 PANTHER OS02G0815200 PROTEIN 364 649 - -
Sto8g1145 668 Gene3D - 130 192 - -
Sto8g1145 668 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 133 187 IPR001289 GO:0003700|GO:0006355
Sto8g1145 668 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 561 639 IPR000504 GO:0003723
Sto8g1145 668 MobiDBLite consensus disorder prediction 170 242 - -
Sto8g1145 668 SUPERFAMILY RNA-binding domain, RBD 458 640 IPR035979 GO:0003676
Sto8g1145 668 Gene3D - 417 539 IPR012677 -
Sto8g1145 668 SMART cbf3 129 190 IPR001289 GO:0003700|GO:0006355
Sto8g1145 668 SMART rrm1_1 459 532 IPR000504 GO:0003723
Sto8g1145 668 SMART rrm1_1 562 635 IPR000504 GO:0003723
Sto8g1145 668 MobiDBLite consensus disorder prediction 424 455 - -
Sto8g1145 668 SMART rrm2_1 459 532 IPR003954 GO:0003676
Sto8g1145 668 PRINTS CCAAT-binding transcription factor subunit B signature 133 155 IPR001289 GO:0003700|GO:0006355
Sto8g1145 668 PRINTS CCAAT-binding transcription factor subunit B signature 164 187 IPR001289 GO:0003700|GO:0006355
Sto8g1145 668 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 458 536 IPR000504 GO:0003723
Sto8g1145 668 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 563 633 IPR000504 GO:0003723
Sto8g1145 668 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 460 530 IPR000504 GO:0003723
Sto8g1145 668 Gene3D - 540 646 IPR012677 -
Sto8g1145 668 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 364 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1145 Sto-Chr8 7279750 7286653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1145 28 299 CCAAT-HAP2 Transcription Factor Family AT3G05690 40.764 6.04e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto8g1145 RRM_1 5.1e-21 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1145 - - gmx:100814852 392.504