Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1143 ATGAATAACTTGTTCACTAGCTCCTTCTCTCGCTTCCGTAGCGAGGAATCCTCGCCGGACCACCGTCAACATGTCATCGAGATGAGCTCCACCGGCGGCGTCAATCTCGACAAGTTCTTCGAGGACGTGGAGTCGATCAAGGACGAGCTGAAGGAACTCGAAAGACTGAACCAGAATTTGCAGAGCTGTCACGAGCAGAGCAAGAGTCTTCACAATGCCAAGGCCGTCAAGGACCTCCGCTCACGAATGGACAGCGATGTGTCTCTTGCCCTCAAGAAGGCCAAGCTCATCAAGGTCAAATTGGAGGCACTGGAGCGATCCAACGCCGCCAACCGGAGCCTTCCTGGTTGCGGACCCGGTTCGTCATCCGACCGGACCCGGACCTCCGTGGTCAACGGGTTGAAGAAGAAGCTGAAGGACTCCATGGACAGCTTCAATGACCTCAGGCAACGAATCTCCTCCGAGTACCGGGAGACCGTACAGCGCAGATATTTCACGGTCACCGGCGAGAATCCCGATGAGAAGACCATCGACCTCTTGATCTCTACAGGTGAGAGTGAGACGTTCCTTCAAAAAGCCATCCAACAACAAGGTAGAGGTAGGATTCTAGACACCATCAAGGAAATTCAAGAGAGGCACGATGCTGTGAAAGATTTGGAGAAGAATCTGCAGGAGTTGCATCAAGTATTCTTGGACATGGCAGTTCTGGTGCAATCCCAAGGTGAGCAATTGGATGATATTGAGAGCCACGTGGGTAGAGCTAGCTCGTTCGTGAGGAGTGGAGCCCAGCAGTTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGATGTGTTATGCCATTATTATTCTGcttgtaatcatcttgtttgtGGTGCTCTTCACAGTGAGACCATGGGAAAGTAATGGTAGTAGTGACATGAATGACTTATTCTCCCCCACATTCTACCGCTTCCGTAGCGACCAAGTCTCGCCGGACAACCACCAACATGTCATCGACATGACGGACACATCACCACCGTCCACAGAATGCATCAACCTCAATAAATTCTTCTCCGAAGTGGAATCCATTAAAGATGAACTCAAGGAGCTAGAGCGTCTCAACCACACCCTTCTTGACTCCCATGAAAACAGCAAGACCCTTCACAATGCCAACGCCGTTAAGGACCTTCGCTCGCGAATGGACGCTGACGTGGCTCTCGCTCTCTCCAAAGCCAAGCTCATCAAGCTCCGCTTGGAAGCATTGGACCGCTCCAACCAAGCCAGCCGGAGTTTGCCGGGTTGCGGTCCCGGTTCTTATTCGGACCGGACTCGGAGCTCCGTGCTGAGCGGGCTAACAAAGAAGCTGAAGCACTCCATGGACAGCTTCAACAACCTCAGAGAAAAGATCTCGTTGGAGTACAGAGAGATTGTGCAAAGAAGATACTACGCCGTCACCGGCGAGAATCCCGACGACGAAACCCTTGATTTGCTCATCTCCTCCGGTGAGAGCGAGACATTCTTAAAGAAAGCGATACAGCAGCAAGGGAGAGCTAGCGTTTTGGAAACCATAAATGAGATTCAAGAGAGGCATGATGCGGTGAGAGAGATCGAAAGGAATCTGAATGAATTGCACCAATTGTTCTTGGACATGGCAGTGTTGGTGAAATCTCAAGGTGAACAGTTAGACGATATAGAGAGCCATATGGCTCGAGCTAATTCCTTTGTGAAGCGTGGGGTCCACCAGCTGGAGGTAGTCAAGAAAAACCAAAAGAATAGCCGCAAATGGACTTGTTTTGGCATTATACTCTTCCTCGTTATcgtcttaattatatttttccccattttattaagaaaatag 1845 0.4916 MNNLFTSSFSRFRSEESSPDHRQHVIEMSSTGGVNLDKFFEDVESIKDELKELERLNQNLQSCHEQSKSLHNAKAVKDLRSRMDSDVSLALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMDSFNDLRQRISSEYRETVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQQQGRGRILDTIKEIQERHDAVKDLEKNLQELHQVFLDMAVLVQSQGEQLDDIESHVGRASSFVRSGAQQLQTARKHQKNTRKWMCYAIIILLVIILFVVLFTVRPWESNGSSDMNDLFSPTFYRFRSDQVSPDNHQHVIDMTDTSPPSTECINLNKFFSEVESIKDELKELERLNHTLLDSHENSKTLHNANAVKDLRSRMDADVALALSKAKLIKLRLEALDRSNQASRSLPGCGPGSYSDRTRSSVLSGLTKKLKHSMDSFNNLREKISLEYREIVQRRYYAVTGENPDDETLDLLISSGESETFLKKAIQQQGRASVLETINEIQERHDAVREIERNLNELHQLFLDMAVLVKSQGEQLDDIESHMARANSFVKRGVHQLEVVKKNQKNSRKWTCFGIILFLVIVLIIFFPILLRK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1143 614 Pfam Syntaxin 351 554 IPR006011 GO:0016020
Sto8g1143 614 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Sto8g1143 614 Coils Coil 36 73 - -
Sto8g1143 614 CDD SNARE_syntaxin1-like 518 579 - -
Sto8g1143 614 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sto8g1143 614 SMART tSNARE_6 514 581 IPR000727 -
Sto8g1143 614 SMART tSNARE_6 201 268 IPR000727 -
Sto8g1143 614 Coils Coil 349 376 - -
Sto8g1143 614 Pfam SNARE domain 555 606 IPR000727 -
Sto8g1143 614 Pfam SNARE domain 242 294 IPR000727 -
Sto8g1143 614 Gene3D - 347 479 - -
Sto8g1143 614 Gene3D - 34 166 - -
Sto8g1143 614 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 320 609 - -
Sto8g1143 614 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 16 305 - -
Sto8g1143 614 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Sto8g1143 614 CDD SynN 36 193 IPR006011 GO:0016020
Sto8g1143 614 Gene3D - 509 611 - -
Sto8g1143 614 Gene3D - 203 299 - -
Sto8g1143 614 ProSitePatterns Syntaxin / epimorphin family signature. 525 564 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sto8g1143 614 SMART SynN_4 31 157 IPR006011 GO:0016020
Sto8g1143 614 SMART SynN_4 344 470 IPR006011 GO:0016020
Sto8g1143 614 CDD SynN 349 506 IPR006011 GO:0016020
Sto8g1143 614 SUPERFAMILY t-snare proteins 348 574 IPR010989 GO:0016020|GO:0016192
Sto8g1143 614 MobiDBLite consensus disorder prediction 1 22 - -
Sto8g1143 614 PANTHER SYNTAXIN 16 305 IPR045242 -
Sto8g1143 614 PANTHER SYNTAXIN 320 609 IPR045242 -
Sto8g1143 614 Coils Coil 206 229 - -
Sto8g1143 614 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020|GO:0016192
Sto8g1143 614 CDD SNARE_syntaxin1-like 205 267 - -
Sto8g1143 614 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 519 581 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1143 Sto-Chr8 7270247 7273983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1143 343 593 SNARE and Associated Proteins AT3G11820 71.713 4.27e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1143 K08486 - tcc:18598421 480.33