Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1140 ATGGATCAAGATCAGATTGAGGTTCCTCCATTCTTCCTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCAATCACCGTCTCCACCGGGATTACCTACGACCGTCACAGCATCGAGAGATGGCTCTTCTCCGCCAACAACACCACCTGCCCCGTCACCAAACAACCCCTCTCTCTATCTCAACTCACCCCCAATCACACCCTTCGTCGCCTCATTCAATCCTGGTGCACCCTCAACGCCTCCCACGGCATCCAGAGGATCCCAACCCCCAAGCCTCCAGTCTCCAACTCTCAAATCTCCAAACTCCTCAACGACGCTTCCAAACCCCTCATCCAACGCCTCCAATCACTCCGATCCATCGCCTCCGACAGCGATGCCAATAAACGCACCATCGAATCCGCCGGCGCCGTTGACTTCTTAGCCTCCATCGTACTCTCCCACACCACAACTTCTTCTTCCTTCGACGATATGGATGGCTTTGACTTGAAAACCAGACCAGCCGATGAAGCCTTGAGCCTCCTCCACACCCTCCACCTCTCTGAATCTGGCCTCAACACTCTCCTCACTTTCAAACACGGAGATTTCATTCCCTGCCTCACCACAATCATGCAGAGAGGCTTCTACGAGTCACGCGCCTATGCCGTTCTATTATTGAAGTCCATCCTAGGAGTCGCCGATTCCACGCTTTTATCAAATCTCAAAACGGAAATGTTAGTTGAGCTGGTTCAAATCCTCAAGGACCAGATCTCGCCACAGGCCTCAAAGGCGGCGTTGAAAACACTGATCCAAATATGCGCGTGTGGGAGAAACAGAATACGAGCGGTGGAAGCAGGAGGCGTATCGGTGTTGATAGAGCTGCTTTTGGATTGTAAGGAGAGGAAAGGGTGTGAGATGATGCTGGTGTTGTTGGAGTTGCTGTGTGGGTGCGCCGAGGGGAGAGCCGAGGTGTTGAGCCACGGCGCCGGGATGGCCATCGTGTCCAAGAAGATACTGAGGGTTTCCACGATGGCGAATGATCGGGCGGTGAGGATCTTGCTGTCTATCGCCAAGTTCTCGGCCACTCCGAGTGTGTTGCAAGAAATGATGCAAGTGGGAGTGGTGGCCAAGCTGTGTTTGGTGCTTCAAGTGGAAAGTGGGAACAAGGCTAAGGATAAGGCTAGGGAGATTCTCAAAATGCATGCTCGCGCATGGAGGAATTCTCCTTGCATTCCAATCCATTTGCTTTCTTCTTacccaaattaa 1242 0.5201 MDQDQIEVPPFFLCPISLEIMKDPITVSTGITYDRHSIERWLFSANNTTCPVTKQPLSLSQLTPNHTLRRLIQSWCTLNASHGIQRIPTPKPPVSNSQISKLLNDASKPLIQRLQSLRSIASDSDANKRTIESAGAVDFLASIVLSHTTTSSSFDDMDGFDLKTRPADEALSLLHTLHLSESGLNTLLTFKHGDFIPCLTTIMQRGFYESRAYAVLLLKSILGVADSTLLSNLKTEMLVELVQILKDQISPQASKAALKTLIQICACGRNRIRAVEAGGVSVLIELLLDCKERKGCEMMLVLLELLCGCAEGRAEVLSHGAGMAIVSKKILRVSTMANDRAVRILLSIAKFSATPSVLQEMMQVGVVAKLCLVLQVESGNKAKDKAREILKMHARAWRNSPCIPIHLLSSYPN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1140 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 412 - -
Sto8g1140 413 SMART Ubox_2 11 75 IPR003613 GO:0004842|GO:0016567
Sto8g1140 413 Pfam U-box domain 8 77 IPR003613 GO:0004842|GO:0016567
Sto8g1140 413 ProSiteProfiles U-box domain profile. 7 82 IPR003613 GO:0004842|GO:0016567
Sto8g1140 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Sto8g1140 413 Gene3D - 95 399 IPR011989 -
Sto8g1140 413 PANTHER WDSAM1 PROTEIN 4 412 IPR045185 GO:0061630
Sto8g1140 413 SUPERFAMILY ARM repeat 106 380 IPR016024 -
Sto8g1140 413 SUPERFAMILY RING/U-box 3 81 - -
Sto8g1140 413 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1140 Sto-Chr8 7236345 7237586 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1140 1 412 U-box Gene Family AT2G35930 56.563 8.03e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1140 - - gmx:100811258 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1140 8 7236345 7237586 Sto8g1140 8 7236345 7237586 ECH