Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1138 ATGGAGGAAGTTGAAATCCCGCAGTATTTCATCTGCCCCATCTCCCTCCAAATAATGAAGGATCCAGTGACTGCCATAACCGGCATCACTTACGACCGAGACAGCATCGAGCGCTGGCTCTTCACCAACAACAACACCATTTGCCCCGTCACCAAACAGCCCCTTCCTCTTGACTCCGACTTAACCCCCAATCACACCCTTCGCCGCCTCATCCAAGCCTGGTGCACCCAAAACGCCTCCCTCGGCGTGGATCGCATTCCCACCCCTAAACCACCCCTCACCAAGTCTCAAGCCCTCAAAATCCTCCACAACTTCCACCTCCACCCCCATCGCCGCCTTCCCATCCTCACACAACTCGAACTACTCGCCGCCGAGAATGACAGGAACAAGAAGTGCCTCATCGACGCCGGAGTCCCCAAGGCCGTCCTCCTCTTCCTTCTCGATTGCTTCAAGTCACGCCAACTCCACCAGGGACTGCAGCAGGCTCTTAGTTTGTTACAGTTTGTTAGGATTCCCTCCGAGGAAATCAAGGCGGTTATTTCGGAAAATGATCAGATTTTGGATTCTCTCGTTTGGATTCTAGGATGCGAAATCGTGGAGAGTGATTCGGTGAGTGTGAAATCCCACGCGCTTATCGTGCTCAAGACAATCATCCACAAGGCCGGGTCGGGCATCCTGGAGAGACTGGAACCCGAATTCTTCGAGAGGATCGTGAGAATATTACGGAAGGGGATAACGCAGCAAGGGATGAACGCTGGTTTGAAAGTGATGGTGGCGGCTTGCCCTTGGGGAAGGAATCGGAAGATGATGGTGGATGCAGGGGCAGTATGGGAATTGATAGAGATTGAATTGGGGATTCCTGAGAGGAGAACGACGGAGCTAGTGTTAGAGATACTGTTTCACCTGTGCTCTTGTGCGAATGGGAGAGCTCAATTTGTGAGTCACAGAGGAGGCATTGCAGTAATAACGGAGAGAGTATTGAAGATTTCTAGGAGTGTGGATGAGAGAGCTGTATTTATTCTATCGCTCATATCGAATTCGTCGTATGGTTCGCATATGGTGATTCAGGAGATGCTGAAGCTAGGGACtgtgtccaagctttgcatgtTGCTTCAGTCTGATCATCCCACGTATCTCAAAGAGAAAGCCATGGAAATGCTCAAAGCTCATTCTGAGGTTTGGAAGAACTCTCCCTGCTTTCCTGATCGATCTTTTTATGCAAGCTTGCACAAGTGA 1236 0.4984 MEEVEIPQYFICPISLQIMKDPVTAITGITYDRDSIERWLFTNNNTICPVTKQPLPLDSDLTPNHTLRRLIQAWCTQNASLGVDRIPTPKPPLTKSQALKILHNFHLHPHRRLPILTQLELLAAENDRNKKCLIDAGVPKAVLLFLLDCFKSRQLHQGLQQALSLLQFVRIPSEEIKAVISENDQILDSLVWILGCEIVESDSVSVKSHALIVLKTIIHKAGSGILERLEPEFFERIVRILRKGITQQGMNAGLKVMVAACPWGRNRKMMVDAGAVWELIEIELGIPERRTTELVLEILFHLCSCANGRAQFVSHRGGIAVITERVLKISRSVDERAVFILSLISNSSYGSHMVIQEMLKLGTVSKLCMLLQSDHPTYLKEKAMEMLKAHSEVWKNSPCFPDRSFYASLHK 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1138 411 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Sto8g1138 411 Gene3D - 88 397 IPR011989 -
Sto8g1138 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 405 - -
Sto8g1138 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Sto8g1138 411 PANTHER WDSAM1 PROTEIN 3 405 IPR045185 GO:0061630
Sto8g1138 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Sto8g1138 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Sto8g1138 411 CDD RING-Ubox_PUB 10 53 IPR045210 -
Sto8g1138 411 SUPERFAMILY ARM repeat 92 395 IPR016024 -
Sto8g1138 411 SUPERFAMILY RING/U-box 3 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1138 Sto-Chr8 7217194 7218429 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1138 2 400 U-box Gene Family AT3G11840 42.308 4.85e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1138 - - lja:Lj0g3v0014579.1 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1138 8 7217194 7218429 Sto8g1138 8 7217194 7218429 ECH