Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1135 ATGGCGACGTACTTCCATGGCAATTCCGAAATTCAAGCACCCGATGGCGCCCTCCAAACTCTAGTACTCATGAACCCCGGATACATCCACTACTCCGACACCCCGCCGCCACAACCAAACAACCTTCTCTTCCTCAATTCCAGCCCCAACAACTCCCTCCCTCCTCAAAACCTCCACCACGCGCCGCCTCCTCACACCCAGCAATTTGTCGGCATCCCTCTCCCCGCCGCCTCCCAACAAGACCCCACCATGCACCACGACGTCTCCGCCTTGCATGGCTTCATCCCCCGCATGCACTACAACCTCTGGAGCACAATTGACCCCAATACGGCGGCGCGTGACACACCACGCGCCCAGCAGCAGGGTCTCTCCCTCAGCCTTTCATCTCAGCAAGGGGATGACGTGCGTGTGTCAGGTGGGTCATCATCTTCGGCGTCTGGAGTAACCAATGGCGTTTCGGGCATTCAGAGCGTGCTTCTGGGCTCTAAGTACTTGAAGGCCGCGCAGGAACTGCTAGACGAGGTCGTCAATGTTAACGATGGGATTAAGACTGAAATGACCAAAAAATCCAGCAGCCAGACAAAGGTGATCGGAGAGTCGTCCACAGCCGCCAGCGGCGACGGTTCAATTGGCGGCGGGGAGGCAAGCGGAAAGCCCACCTCTGAGCTATCAACAGCGGAGAGACAAGAAATTCAGATGAAGAAGGCAAAGCTAATCAGCATGCTTGACGAGGTGGAACAAAGGTACAGACAGTACCACCATCAGATGCAGATAGTGAGTTCATCGTTTGAGCAAGCGGCGGGAATTGGGTCGGCGAGAACATACACAGCACTAGCACTACAAACCATCTCGAAGCAGTTTCGGTGTCTGAAAGATGCAATAACGGCTCAAATTCGAGGTGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTGGGAGGCAAAATAGAAGGTTCGAGGCTGAAATATGTGGACCATCACCTACGCCAACAACGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCCGTTCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGATTCAGACAAACACATGCTTGCCAAACAAACAGGCCTCACCAGGAGCCAGGTGTCCAATTGGTTTATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGAGCAAGAACAGAATGGGTCAGAGGAGAAATCATCAAAGAGTACCGAAGATCCCCCCACTAAAATTGCAGCCCCACAAGAGAAGCCTCCTGAAGTATCTACCACCGCGCCATCATCAACATCACCAGTTGGGGGTTTCAGCTTCATGGGGTCATCAGAACTAGATGGGATCACCCAAGCAAGCCCAAAGAAACCCAGGAACCACCACGAGATTCTGCAGCACTCCCCAATTAACATGGATATGAAAGCAGATGAAACAGAGAATGAGCAAGTGTCAATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGGTACTCTTTCATGGGCAACCAAACAAACTTCATTGGGGGATTTGGGCAATACCCAATTGCAGAAATTGATAGGTTTGACGCAGAGCAATTCACTCCAAGGTTCTCAGGTAATGGGGTTTCCCTCACTCTTGGTCTTCCCCACTGTGACTCACTATCAGCAGCAACCCATCAAACCTTTCTTCCAAACCAGAGCATTCAATtaggaggaagaaggatggagaTTGGTGAGACCAATGAGTTTGGTGGCATCAACACTCCCACTCCTCACTCTTCAGCTGCATTTGAGAATATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTATTGCCAGACTTTGTGGCTTGA 1905 0.5087 MATYFHGNSEIQAPDGALQTLVLMNPGYIHYSDTPPPQPNNLLFLNSSPNNSLPPQNLHHAPPPHTQQFVGIPLPAASQQDPTMHHDVSALHGFIPRMHYNLWSTIDPNTAARDTPRAQQQGLSLSLSSQQGDDVRVSGGSSSSASGVTNGVSGIQSVLLGSKYLKAAQELLDEVVNVNDGIKTEMTKKSSSQTKVIGESSTAASGDGSIGGGEASGKPTSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITAQIRGANKSLGEEDCLGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEQNGSEEKSSKSTEDPPTKIAAPQEKPPEVSTTAPSSTSPVGGFSFMGSSELDGITQASPKKPRNHHEILQHSPINMDMKADETENEQVSMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIAEIDRFDAEQFTPRFSGNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGGRRMEIGETNEFGGINTPTPHSSAAFENINMQNPKRFAAQLLPDFVA 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1135 634 MobiDBLite consensus disorder prediction 186 225 - -
Sto8g1135 634 ProSiteProfiles 'Homeobox' domain profile. 341 404 IPR001356 GO:0003677
Sto8g1135 634 SMART prehox3 153 296 IPR006563 -
Sto8g1135 634 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Sto8g1135 634 CDD homeodomain 344 404 IPR001356 GO:0003677
Sto8g1135 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 579 - -
Sto8g1135 634 MobiDBLite consensus disorder prediction 413 431 - -
Sto8g1135 634 Gene3D - 347 427 - -
Sto8g1135 634 MobiDBLite consensus disorder prediction 186 207 - -
Sto8g1135 634 SUPERFAMILY Homeodomain-like 345 411 IPR009057 -
Sto8g1135 634 MobiDBLite consensus disorder prediction 413 483 - -
Sto8g1135 634 Pfam Associated with HOX 158 295 IPR006563 -
Sto8g1135 634 Coils Coil 228 248 - -
Sto8g1135 634 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 579 - -
Sto8g1135 634 MobiDBLite consensus disorder prediction 446 473 - -
Sto8g1135 634 SMART HOX_1 344 408 IPR001356 GO:0003677
Sto8g1135 634 MobiDBLite consensus disorder prediction 111 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1135 Sto-Chr8 7203981 7206247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1135 1 634 Homeobox Transcription Factor Family AT2G35940 53.527 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sto8g1135 POX 1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1135 - - qsu:112031679 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1135 8 7203981 7206247 Sto13g2997 13 34807290 34811708 CCT
Sto8g1135 8 7203981 7206247 Sto8g1135 8 7203981 7206247 ECH