Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1110 AtgtctctctctcacacaccgCCACTTCCACGGCATCCATATGTCGTTACTCGTTCAGTGTGGTCTTCCAATCTCGAGTCCGAGTTTCAGTTGATTCGATCCATCATCGATGCCTACCCTCTCATCTCCATGGATACCGAATTTCCGGGCGTCCTCGTTCGTTCCGACGCGGCCAATCCTCACTTCCGCCATCGTCAACCCACCGCTCAATATGCTGTCCTTAAAGCCAACGTTGATCGTTTGCACTTGATCCAAATCGGCCTCACTCTTTCGGACGACGAGGGCAACCTTCCCAACCTGGGCACCCCCAATTTTTACATCTGGGAATTCAATTTCAGAGATTTTGATGTTGCCCGTGACGCCCACGCTCATGACTCGGTTGAACTGTTAAGGCGCCAAGGCATCGATTTCGAAAAGAACAGAAAGTTTGGGATCGACTCCGTGCGATTCGCCGAGCTGATGATGTCGTCAGGGCTCGTGTGCAATGACGCTGTCAGCTGGGTGACGTTTCACAGTGCCTATGACTTTGGCTACCTTGTTAAGTTGCTCATTCAGCGGACTTTGCCTGATGAGTTAGTCGACTTCATCCGTCTTGTGAGGGTGTTATTTGGGGATAGAGTTTTCGATATCAAGCACCTCATGAGGTTCTGCTGGAACCTACACGGTGGGTTAGACCGAGTTTGCCAGTCCCTCAATGTGCAGAGAATTACAGGGAAAAGCCATCAGGCCGGGTCAGATAGCTTGCTCACTTTACATGCTTTTCAGAAAATCAGGGAGGTTTACTTTGATAAGGAAGACGGGCTAGTCAACTATGGAGAGAGGTATCAGGATGATAAAAGCAGTAGCTATTCCCTTGTGCAGAAATCGCGTTTTGGCATTAGTGAGATGCGGCAGGATGCCTGGACTCTAGCACTGTGCTTAGACAAAATATCAAACTTCATCTTTGATTCCACACTCAAAGTTACTTGCCTGGTCGATGTATTTCACTGGATTAAGTACATCTATTGTATTGCGAGATATGGAAATGCTCAAGGAAATATATCAAGAGTTTCTTCTGCTCGTGTTATCTGGATTGGATTTGTACAGGTTTACTCAATCATTCTACAGTCTGGAGGTTCAAGTACTGCTGAAATCAGGATAGACCAATTCAGACTCTGGtatgtttctttctctctttttttttttttttggatgaagACTCTGATGGGTAAGAAAATCACGAGGCCATGGACTTCCTCCTCTTGGGGTTGGCCCTCTTGTCACCAACCCAGAACCCTCTCTTTCAGAGCCAACACTACAACTACTTCTACAACTACTGCCTCCCAAATCTTCAAAACCATCAACTCTGCCTACTTCGACTTGGAATTGGATTTAGACACGCTTCAGCTTCAGCTTCATCATCCAGAGGATTCCAGAACAGAATTAGACATAGAGGGCGTGATTCAGGGTTTGCGGTCGGACCGGCGTCGGCTCTTCTTCGAACCGGGTGAGACTAGCTCCATATTGGAGGCTAAAGCAGCAGGAGGATGTGCCTTGCCATTCAAAGACAGCGTGATGCTATCGATGGAGTCTCGAGACCCTTTTCTTGATTTCCGAAACTCCATGGAGGAGATGGTTCAGGCTCACTCTCTCAACCATCCTCAGGCTCTTGAGGATCTATTGTGCTGGTATTTGAGGCTCAATGGCAACACCAATCATTCCTATATTCTCGCTGCTTTTGTTGATTTATTGCTTGCTCAttcctctgcttcttcttcttcttcttctcattctCCTTCTTCCCCCTTATCCTTCTCTACTActtctcattcttcttcttttagtaCGCCTTGTGCTTTAGAGGCTGATCAGGATCAGGACCACCTTCACGCTCCTACTACTTCATCTTTCACCCTCTTAGAACGGGTTAACGAGGATATTACCCCTCACGTCCACCatcatccttcttcctcttcaaatTAA 1962 0.4429 MSLSHTPPLPRHPYVVTRSVWSSNLESEFQLIRSIIDAYPLISMDTEFPGVLVRSDAANPHFRHRQPTAQYAVLKANVDRLHLIQIGLTLSDDEGNLPNLGTPNFYIWEFNFRDFDVARDAHAHDSVELLRRQGIDFEKNRKFGIDSVRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKLLIQRTLPDELVDFIRLVRVLFGDRVFDIKHLMRFCWNLHGGLDRVCQSLNVQRITGKSHQAGSDSLLTLHAFQKIREVYFDKEDGLVNYGERYQDDKSSSYSLVQKSRFGISEMRQDAWTLALCLDKISNFIFDSTLKVTCLVDVFHWIKYIYCIARYGNAQGNISRVSSARVIWIGFVQVYSIILQSGGSSTAEIRIDQFRLWYVSFSLFFFFWMKTLMGKKITRPWTSSSWGWPSCHQPRTLSFRANTTTTSTTTASQIFKTINSAYFDLELDLDTLQLQLHHPEDSRTELDIEGVIQGLRSDRRRLFFEPGETSSILEAKAAGGCALPFKDSVMLSMESRDPFLDFRNSMEEMVQAHSLNHPQALEDLLCWYLRLNGNTNHSYILAAFVDLLLAHSSASSSSSSHSPSSPLSFSTTSHSSSFSTPCALEADQDQDHLHAPTTSSFTLLERVNEDITPHVHHHPSSSSN 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1110 653 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9 271 IPR039637 GO:0004535|GO:0030014
Sto8g1110 653 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 9 271 - -
Sto8g1110 653 Gene3D - 8 276 IPR036397 GO:0003676
Sto8g1110 653 SUPERFAMILY Ribonuclease H-like 9 269 IPR012337 -
Sto8g1110 653 Pfam Transcriptional repressor, ovate 524 578 IPR006458 -
Sto8g1110 653 MobiDBLite consensus disorder prediction 609 628 - -
Sto8g1110 653 Pfam CAF1 family ribonuclease 20 145 IPR006941 -
Sto8g1110 653 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 518 579 IPR006458 -
Sto8g1110 653 ProSiteProfiles OVATE domain profile. 520 579 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1110 Sto-Chr8 7018679 7029044 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Sto8g1110 CAF1 4.6e-09 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1110 K12581 - gmx:100790027 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1110 8 7018679 7029044 Sto13g3026 13 34977319 34978068 CCT
Sto8g1110 8 7018679 7029044 Sto8g2727 8 19354091 19355100 ECH
Sto8g1110 8 7018679 7029044 Sto8g1110 8 7018679 7029044 ECH