Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1100 ATGTTCGAGAAGGCGTTGACGCCGAGTGACGTGGGGAAGCTGAACCGTCTGGTGATCCCGAAGCAGCAGGCGGAGAAGTACTTCCCACTCAGCGATTCAGGTGAGAACAAGGGAGTTGTGCTGAGTTTCGAGGACGAGTCGTGCAAGTGCTGGCGATTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGCTGGAGCCGTTACGTTAAAGACAAGCGCCTCCTCGCTGGCGACGTCGTTTGCTTCCTCCGAAGAGGAAGGCAATCTCATCAGAAGCAAAGCTGCAATAAGGTGCTGAGGCTATTCGGAGTGAACATGGAATGCCAAACCCCACCAGAAACACAAGACAAACAAGAAGAAGCGGGTGAATCCACACCCCAATACCCTACTACTACTCATCACATGACGTCATCATCAACTTACCACAACCTCTACCACTATCATCACCCTTCTTATGCTCACCATCACATGATTCAGGTGGAGTATCCCCCTCATAATTAG 516 0.5155 MFEKALTPSDVGKLNRLVIPKQQAEKYFPLSDSGENKGVVLSFEDESCKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLLAGDVVCFLRRGRQSHQKQSCNKVLRLFGVNMECQTPPETQDKQEEAGESTPQYPTTTHHMTSSSTYHNLYHYHHPSYAHHHMIQVEYPPHN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1100 171 SUPERFAMILY DNA-binding pseudobarrel domain 1 92 IPR015300 -
Sto8g1100 171 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 99 144 - -
Sto8g1100 171 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 1 91 - -
Sto8g1100 171 CDD B3_DNA 1 95 IPR003340 GO:0003677
Sto8g1100 171 Pfam B3 DNA binding domain 2 92 IPR003340 GO:0003677
Sto8g1100 171 Gene3D - 1 106 IPR015300 -
Sto8g1100 171 MobiDBLite consensus disorder prediction 114 140 - -
Sto8g1100 171 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 91 IPR044800 GO:0003700
Sto8g1100 171 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 99 144 IPR044800 GO:0003700
Sto8g1100 171 MobiDBLite consensus disorder prediction 126 140 - -
Sto8g1100 171 SMART B3_2 2 110 IPR003340 GO:0003677
Sto8g1100 171 ProSiteProfiles B3 DNA-binding domain profile. 2 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1100 Sto-Chr8 6932766 6933752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1100 1 154 RAV Transcription Factor Family AT3G61970 53.750 2.07e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto8g1100 B3 1.1e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1100 - - ccaj:109813998 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1100 8 6932766 6933752 Sto13g3040 13 35075872 35077336 CCT
Sto8g1100 8 6932766 6933752 Sto8g1100 8 6932766 6933752 ECH