Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1079 TTGGGGGGTTTGGTGATTGCCCGATTGGTTTCGAGTTACGGGCAGCAAGCCTTTCTATGGGAAGCTGCACTCAACGCGGTATATAAGCTTAGGGTTCACGTTTTTGACAGAGTTTTGGAGAGAGAATTGGGCTATTTTGAAGGCAAAGAGGGTATTTCTGCAGGGGACATTGCGTATCGGATCACTGCTGAAGCTTCGGATGTTGCTGATACTTTATATGCTGTCCTCAATACCATAATTCCCAGCAGTTTACAGTTATCAGCAATGATGACGCAGATGTTGGTTATCAGTCCTgttctttctttgatttcagCTGTGGTTATTCCTTGTATGGCGCTTGTTGTTGCCTTTCTTGGTCAGAAACTTCGTACAATATCTAGAAAGGCACATCTTAGCATTGCCAATCTCTCAGCATACCTAAATGAGGTCCTCCCAGCAATTCTTTTTGTCAAAGCAAACAATGCAGAGCTGTGTGAGAGCGCCAGGTTTAAGAGGCTGGCTTGGATTGACTCTTTGGGACACctgaacaagaagaggatgaagGCACTCATTCCTCAGATTACACAAGCTATTTATTTTGGAGTCCTTTTTGCACTTTGTGCTGGTTCACTGGTGGTTTCTGGAGGATCATTTGATGGCCATAACTTAGTTTCATTTGTCACATCATTGCTTTTCTTGATTGAACCAATCCAGGATGTGGGAAAAGCATATAATGAATGGAGGCAGGGAGAACCAGCTGTGGAACGCATGTATGATCTGACCAGATTAGAACATAAGgTGGTTGAGAAACCAGATGCTGTTGATTTAGACTATGTTAGAGGGGAGCTAAAATTTTGCAATGTCTCATTTAAGTATGATAACGACATGTCACTTGTTATTAATGGACTGAACCTTCACATCAGAGCTGGAGAGATAGTTGCTCTTGTGGGTCCCTCAGGTGGAGGGAAGACTACACTTGTAAAACTGTTGCTTCGCCTTTATGATCCTATATCTGGCTGTATACTGATTGATAATCATAACATCCAAAACATTCGGTTGCAAAGTTTGAGAAGACACGTTGGTCTTGTTTCTCAAGATATAACACTATTTTCAGGAACAGTTGCTGAAAATATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGGGTTAAGTCTGCAGCACAAACTGCTTATGCTGACGAGTTTATCAGAAAACTTCCAGAAGGATACAAAACTAATATTGGACCAAGGGGCTCAACTTTAAGTGGTGGCCAAAGGCAAAGGCTAGCTATTGCAAGAGCACTCTATCAGGAATCTTCTATATTAATTCTGGATGAGGCAACTTCTGCTTTAGATAGCAAATCTGAGTTATTGGTGAGACAAGCTGTAGAGCGTTTGATGGAAAATCATACTGTGCTGGTTATTGCCCATCGCATGGAAACAATTCGGATGGCTAAACGAGTATTCCTGATGGATAAGGGGAAGCTGCAAGAGTTGCCTCCTTCATCTATATGGGGTGGTCACAAGGATTCATTGCTATCATCTGAGTTTGtgatttga 1545 0.4084 LGGLVIARLVSSYGQQAFLWEAALNAVYKLRVHVFDRVLERELGYFEGKEGISAGDIAYRITAEASDVADTLYAVLNTIIPSSLQLSAMMTQMLVISPVLSLISAVVIPCMALVVAFLGQKLRTISRKAHLSIANLSAYLNEVLPAILFVKANNAELCESARFKRLAWIDSLGHLNKKRMKALIPQITQAIYFGVLFALCAGSLVVSGGSFDGHNLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAVERMYDLTRLEHKVVEKPDAVDLDYVRGELKFCNVSFKYDNDMSLVINGLNLHIRAGEIVALVGPSGGGKTTLVKLLLRLYDPISGCILIDNHNIQNIRLQSLRRHVGLVSQDITLFSGTVAENIGYRDLTTKIDMERVKSAAQTAYADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARALYQESSILILDEATSALDSKSELLVRQAVERLMENHTVLVIAHRMETIRMAKRVFLMDKGKLQELPPSSIWGGHKDSLLSSEFVI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1079 514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 242 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1079 514 SUPERFAMILY ABC transporter transmembrane region 2 256 IPR036640 GO:0005524|GO:0016021
Sto8g1079 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 494 IPR027417 -
Sto8g1079 514 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 1 501 - -
Sto8g1079 514 Gene3D - 266 510 IPR027417 -
Sto8g1079 514 Gene3D ABC transporter type 1, transmembrane domain 1 255 IPR036640 GO:0005524|GO:0016021
Sto8g1079 514 SMART AAA_5 302 490 IPR003593 -
Sto8g1079 514 Pfam ABC transporter 294 444 IPR003439 GO:0005524
Sto8g1079 514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 276 513 IPR003439 GO:0005524
Sto8g1079 514 ProSitePatterns ABC transporters family signature. 416 430 IPR017871 GO:0005524
Sto8g1079 514 CDD ABC_6TM_exporters 1 249 - -
Sto8g1079 514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 501 IPR039421 -
Sto8g1079 514 Pfam ABC transporter transmembrane region 2 229 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1079 Sto-Chr8 6784031 6787502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1079 11 509 Calmodulin-binding Proteins AT2G36910 31.518 6.17e-58 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1079 K02021 - gmx:100788075 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1079 8 6784031 6787502 Sto8g1079 8 6784031 6787502 ECH