Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1056 ATGGCAGAAGAGCACCGATGCCAAGCACCCGAAGGCCACCGTCTATGCGCCAACAAGTGCGGCTTCTTCGGCAGCCCAGCCACCATGAATCTCTGTTCCAAATGCTACAGAGATTTCCGTCTAAAGGAACAACAAGAAGCCTCTACCAAATCAACCATCGAGTCCGCTCTCTCCTCGTCTTCTGCCCCATCGCCGTCTCCGGCCGTCGAGTCCCTCcctcctccgccgccgccgGTGCTAACAGTGCCGGAGGTTGTGGTAAACGATTCGGGCTCGGCAAGTGTAACCGCCGTGCCGGATGGGACGGCGGAAAAACCCAGCCGGTGCGCGACGTGCCGGAAACGGGTCGGGTTGACGGGGTTTAAGTGCAAGTGCGGTGTCACTTATTGTGGGGTCCACAGGTACCCGGAGAAACACGGGTGTAGCTTTGATTTCAAGAAGGTGGGGCGGGAGGAGATAGGCAGAGCAAATCCCGTGATCAAAGCTGAGAAGCTGCAGAAGATTTAA 507 0.5464 MAEEHRCQAPEGHRLCANKCGFFGSPATMNLCSKCYRDFRLKEQQEASTKSTIESALSSSSAPSPSPAVESLPPPPPPVLTVPEVVVNDSGSASVTAVPDGTAEKPSRCATCRKRVGLTGFKCKCGVTYCGVHRYPEKHGCSFDFKKVGREEIGRANPVIKAEKLQKI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1056 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Sto8g1056 168 SUPERFAMILY AN1-like Zinc finger 100 163 IPR035896 -
Sto8g1056 168 Pfam AN1-like Zinc finger 109 145 IPR000058 GO:0008270
Sto8g1056 168 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Sto8g1056 168 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 168 - -
Sto8g1056 168 PANTHER BNAC06G14100D PROTEIN 1 168 - -
Sto8g1056 168 Gene3D - 87 164 IPR035896 -
Sto8g1056 168 MobiDBLite consensus disorder prediction 47 83 - -
Sto8g1056 168 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Sto8g1056 168 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Sto8g1056 168 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Sto8g1056 168 Gene3D - 1 65 - -
Sto8g1056 168 MobiDBLite consensus disorder prediction 48 66 - -
Sto8g1056 168 MobiDBLite consensus disorder prediction 67 82 - -
Sto8g1056 168 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1056 Sto-Chr8 6672227 6672733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1056 1 168 C2H2 Transcription Factor Family AT3G52800 56.322 1.38e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1056 - - cpap:110822742 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1056 8 6672227 6672733 Sto13g3088 13 35330240 35330755 CCT
Sto8g1056 8 6672227 6672733 Sto8g1056 8 6672227 6672733 ECH