Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1033 ATGTTGGGGCAGCAGGCAGCAGAAACCCTAGTAGGTGGAGATAGAACACGGTGTCCAACCCAGATATCCAACACAAAGCTGGGTTACACCCCAACTCCTTACACGCCGCAGTTGAGCAACAACTGgaatCATTCTACTATTACTATGCGCTCCAACAACGGAGCTAGCAGCAGCCAATCCAGTGGACGCCACCCGGTGTACCGGGGAGTGAGGCGCCGGAGTAGCGGCAAATGGGTGTCCGAAATTCGAGAGCCCAGAAAGCCCAATAGGATATGGCTGGGCACATTCGCTACCCCTGAAATGGCAGCTGTTGCCTATGACGTGGCAGCCCTTGCTCTGAAGGGCTCCCACGCTGACCTCAACTTCCCTGAATCCGCCtcctcccttcccctccccgCCTCTTCCTCTCCACGTGACATTCAGCTGGCTGCCGCCAGTGCTGCTGCCGCTGCCGCCGCTGCCAACGATGCTTTCTCTCGCTCCTCTCCTCCTTCCAATCCCAATATTACTATtattcaacaacaacaaccagGGAATGGTAATGCCAATGTGAATAATGTTTCCCAGCTGGGGTCACCATCACCAGCAGCTGAGTTTGTGGATGAGGATTTGATCTTTGATTTTCCCAATGTTCTTGTCAATATGGCCGAGGGAATGCTGCTTACCCCTCCTCCATTCAACTTAGATCCTCCTCCCCCACCAAATGCTGATCAACATCATGACCACAACCTTTGGAAATTCCCCTAA 747 0.5033 MLGQQAAETLVGGDRTRCPTQISNTKLGYTPTPYTPQLSNNWNHSTITMRSNNGASSSQSSGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFATPEMAAVAYDVAALALKGSHADLNFPESASSLPLPASSSPRDIQLAAASAAAAAAAANDAFSRSSPPSNPNITIIQQQQPGNGNANVNNVSQLGSPSPAAEFVDEDLIFDFPNVLVNMAEGMLLTPPPFNLDPPPPPNADQHHDHNLWKFP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1033 248 MobiDBLite consensus disorder prediction 1 72 - -
Sto8g1033 248 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Sto8g1033 248 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Sto8g1033 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 248 - -
Sto8g1033 248 MobiDBLite consensus disorder prediction 224 248 - -
Sto8g1033 248 MobiDBLite consensus disorder prediction 16 64 - -
Sto8g1033 248 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Sto8g1033 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 42 248 - -
Sto8g1033 248 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Sto8g1033 248 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Sto8g1033 248 CDD AP2 67 124 IPR001471 GO:0003700|GO:0006355
Sto8g1033 248 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Sto8g1033 248 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1033 Sto-Chr8 6477803 6478796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1033 55 248 AP2-EREBP Transcription Factor Family AT2G36450 56.633 1.19e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto8g1033 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1033 - - qsu:112027537 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1033 8 6477803 6478796 Sto13g3107 13 35448539 35459416 CCT
Sto8g1033 8 6477803 6478796 Sto8g1033 8 6477803 6478796 ECH