Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0988 ATGGCGAATACTCCGTCGACGATCGCCCCCGCACCGGCCTCGCTTTACGTTGGTGATCTCCACCCTGACGTCACCGATGGTAAGCTGTTCGATGCATTCTCTGAGTTCAAGACCCTTACTTCTGTTCGGGTCTGTAGGGACTCCTCTACCGGCAGGTCGCTCTGTTACGGCTACGTCAACTTCGTCTCTCCTCAAGACGCAAGTCGTGCTATCGAGGTGAAAAatcattctacaataaatggAAAAGCCATAAGGGTCATGTGGCCAAATCGTAACCCAGATGCAACTAAAAGTGGCATAGGGAATGTGTTTGTTAAGAACCTAGCTGAATCAATAGATAATGTGGGATTACAAGatttgtttcaaaaatatgGTAATATTTTGTCTTGTAAAGTTGTCACGTCTGAAGATGGGAAAAGCAAAGGATATGGCTATGTTCAATTTCAATCTGAGGAATCTGCAAATGCTGCCATTGAGAAGATGAATGGCTCTACTGTTAGAGACAAGCAGATCTATGTTGggaagttcataaaaaaaagtgacCGCATTTTACCTAGTCCTGATGCCAAATATACAAATTTGTACATCAAGAATTTGGACCCGAAAACTACAGAAGAGGTTCTGCAAGAAAAGTTTTCGCCTTTTGGGCAAATTGTTAGCTTAGTTATTGCGAGGGACGACAGTGGGATATCAAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAGACGAGCAATGGAAGCAATGAATGGGTCACAGCTTGGTTCGAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCCGAGCGTGAACATATTCTGCACAATCAATTTGAGGAGAAACGTAaggaacaaattttaaaatacaagGTATCAAATGTTTATGTAAAGAACATTGATGATGATGTGAATGATGAAGAACTGCGCGATCTTTTTCGCGTGTGTGGCTCAATAACATCTGCAATAGTTATGCGTGATTGCAAAGGGAATAGCAAGGGGTTTGGTTTTGTCTGCTTCTCTACTCCTGATGAGGCCAATAAAGCTGTGAACACTTTTCATGGATGTATGTTTCATCGAAAACCACTATATGTTGCTATTGCTCAAAGGAAGGAGGATAGGCGAGCACAATTGCAGCTCCAGCATGCACAGCGATTAGCAGGACTAACTGGACCTCCAATTGCTGTTATTCCTGGCGGATATTCTCCTTACTACTATGCAGCTACCAGTCCTGTTTCACAAGTGCCTTCTCGACCCGGGTTAATGTATCAACCTCTGGGATTGACACCAGGATGGAGGGCTAATGGCTTTGCACCTCCTACCAGACCATATCAACAGTCACTGGTTCCTATGGTTTCTAATACTACTAGGCAACAAAGGCAAAACAGGGGCCGGATGAATGGGCATACACAGCATACAATTCCACAGGGAACTGCTCTCTCTGGTACACATATGCCACAATTGCGGCAACCTTATCAATCAGTGACCTCTAAAGAATCAAGTACTCAGCAGCGGACTGGGCAGACCAAGTATGTGCCTAGCGGGCGCCAGCAAGAGATGGAGAAAGTATCTGGAGTGTCATCTACTGGAGGATCCCAGGGATCAGAAATGCTGCATAGCATGCTTGCCGCTGCTACTCCTGAGCAGCAGAAACAGATACTAGGCGAGCGTCTTTACCCACTAGTCCATAAACTCAAGCCTAGCCTAGCAGCAAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAGTCTCCAGATTCTCTAACTGCCAAAGTCGAAGAAGCTGTGCAAGTGCTCAAGAACTCTAAGACCAAAGTTTCTGGCCAGGATGTACTTCATCCAAATTATTTCTCAGCTGAGGTTGCAGTGAACTGA 1902 0.4359 MANTPSTIAPAPASLYVGDLHPDVTDGKLFDAFSEFKTLTSVRVCRDSSTGRSLCYGYVNFVSPQDASRAIEVKNHSTINGKAIRVMWPNRNPDATKSGIGNVFVKNLAESIDNVGLQDLFQKYGNILSCKVVTSEDGKSKGYGYVQFQSEESANAAIEKMNGSTVRDKQIYVGKFIKKSDRILPSPDAKYTNLYIKNLDPKTTEEVLQEKFSPFGQIVSLVIARDDSGISKGFGFVNYDNPDDARRAMEAMNGSQLGSKILYVARAQKKAEREHILHNQFEEKRKEQILKYKVSNVYVKNIDDDVNDEELRDLFRVCGSITSAIVMRDCKGNSKGFGFVCFSTPDEANKAVNTFHGCMFHRKPLYVAIAQRKEDRRAQLQLQHAQRLAGLTGPPIAVIPGGYSPYYYAATSPVSQVPSRPGLMYQPLGLTPGWRANGFAPPTRPYQQSLVPMVSNTTRQQRQNRGRMNGHTQHTIPQGTALSGTHMPQLRQPYQSVTSKESSTQQRTGQTKYVPSGRQQEMEKVSGVSSTGGSQGSEMLHSMLAAATPEQQKQILGERLYPLVHKLKPSLAAKITGMLLEMDNGELLLLLESPDSLTAKVEEAVQVLKNSKTKVSGQDVLHPNYFSAEVAVN 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0988 633 SUPERFAMILY RNA-binding domain, RBD 293 384 IPR035979 GO:0003676
Sto8g0988 633 PANTHER POLYADENYLATE-BINDING PROTEIN 7 514 - -
Sto8g0988 633 PANTHER POLYADENYLATE-BINDING PROTEIN 531 618 - -
Sto8g0988 633 Gene3D - 2 99 IPR012677 -
Sto8g0988 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Sto8g0988 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Sto8g0988 633 Gene3D - 534 623 - -
Sto8g0988 633 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 609 IPR006515 GO:0003723
Sto8g0988 633 Gene3D - 279 383 IPR012677 -
Sto8g0988 633 SMART rrm2_1 193 265 IPR003954 GO:0003676
Sto8g0988 633 SMART rrm2_1 296 368 IPR003954 GO:0003676
Sto8g0988 633 SMART rrm2_1 102 174 IPR003954 GO:0003676
Sto8g0988 633 CDD RRM2_I_PABPs 99 175 IPR045305 -
Sto8g0988 633 CDD RRM1_I_PABPs 14 93 - -
Sto8g0988 633 MobiDBLite consensus disorder prediction 460 536 - -
Sto8g0988 633 SUPERFAMILY PABC (PABP) domain 470 619 IPR036053 GO:0003723
Sto8g0988 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Sto8g0988 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Sto8g0988 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Sto8g0988 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 261 IPR000504 GO:0003723
Sto8g0988 633 PANTHER RNA BINDING PROTEIN 531 618 - -
Sto8g0988 633 PANTHER RNA BINDING PROTEIN 7 514 - -
Sto8g0988 633 SMART poly_2 548 611 IPR002004 GO:0003723
Sto8g0988 633 SUPERFAMILY RNA-binding domain, RBD 184 274 IPR035979 GO:0003676
Sto8g0988 633 CDD RRM4_I_PABPs 295 372 - -
Sto8g0988 633 CDD RRM3_I_PABPs 191 270 - -
Sto8g0988 633 Gene3D - 183 278 IPR012677 -
Sto8g0988 633 Pfam Poly-adenylate binding protein, unique domain 543 608 IPR002004 GO:0003723
Sto8g0988 633 Gene3D - 101 182 IPR012677 -
Sto8g0988 633 SUPERFAMILY RNA-binding domain, RBD 13 180 IPR035979 GO:0003676
Sto8g0988 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Sto8g0988 633 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 536 613 IPR002004 GO:0003723
Sto8g0988 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Sto8g0988 633 SMART rrm1_1 193 265 IPR000504 GO:0003723
Sto8g0988 633 SMART rrm1_1 296 368 IPR000504 GO:0003723
Sto8g0988 633 SMART rrm1_1 14 87 IPR000504 GO:0003723
Sto8g0988 633 SMART rrm1_1 102 174 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0988 Sto-Chr8 6212454 6216844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0988 10 631 Eukaryotic Initiation Factors Gene Family AT2G36660 52.236 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0988 K13126 - gmx:100779547 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0988 8 6212454 6216844 Sto13g3145 13 35700237 35705095 CCT
Sto8g0988 8 6212454 6216844 Sto8g0988 8 6212454 6216844 ECH