Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0985 ATGGCGGAATCAACATCTGGTGACTCGTCCAACTCCAACCCGACTCCGCCGCCTGCGCCGGTTCCTGAGCACAAAAGTTGGGCTGATGTGGCGGAGGAAGAAGTTGCGGAAGAAGCGAATGCTGCCTCGGCGAGTTCCACAGCAGCCTCGTCTCTCAACGTTGACGAATTAACAATCGATGAGAAAAAGAAGGCTACAAAGTTCTTGGATGAGCCAGAAGATTCCAACATCCAAGCGGTTACATCCGGTGATACACCGTATAATTCAGCGAGCACCTTTGAAGATTTAAATCTCTCTCCAGAGCTTCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCGATGATTTTAAACCCTCCCCATAAGGATTTGATCGCACAGGCACATAATGGTTCCGGCAAGACAACATGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTAAGATGCAGGTTCCTCAGGCTCTTTGCATTTGTCCAACAAGAGAATTGACTATTCAGAACATGGAAGTTCTTCGAAAGATGGGCAAGTACACGGGGATTAGTTCTGAATGTGCCATCCCAGCAGACAGCAGAGACGCTCTTCCAATATCAAAACGAGCGCCTATAATGGCACAAGTAGTGATTGGCACTCCTGGCACAATAAAGAAGTGGATGTCATTTAAGAAACTGGGTGTAAGCAGATTAAAGATTCTGGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATAATTCTTTGAGGAtaatgaaagaaatagaaaaagtcAATCCGCACTGTCAGGTTCTTCTTTTCTCTGCTACATTTAACGACACTGTCAAGAATTTTGTTTCAAGGACAGTTAAGAAGGATCATAATCAACTCTttgtgaagaaagaagaacTATCCTTAGAAGCTGTGAAGCAATACAAGGTGAACTGCCCTGATGAACTTTCTAAGATTGAAGTCATCAAAGATTACATTTTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACAAGAAATAGTGCAAAGATGTTGCATAAATCGCTGGTCGATTTGGGCTATGAGGTTACTTCCATACAAGGTGCTCTTGACaatgaagagagagataagATTGTCAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCGACTGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTGAATTTGGTTATCAATTATGATCTTCCTGTGAAATATACCGCCGAATATACCCGTGAACCAGAGCCTGATTATGAGGTGTATTTGCATAGAGTTGGTAGGGCAGGACGTTTTGGGCGCAAGGGTGCTGTGTTCAACCTGATTTGTGGTGAAAGGGATGAAAATCTCATGGCAAAGATTGAGAGGCATTTTGGCACCCATGTAACTGAGGTCCAAgaaaaaaacgttgaagactATAAACGCGCTCTTAAGGAGGCTGGCTTACTGCAATAA 1503 0.4145 MAESTSGDSSNSNPTPPPAPVPEHKSWADVAEEEVAEEANAASASSTAASSLNVDELTIDEKKKATKFLDEPEDSNIQAVTSGDTPYNSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKMQVPQALCICPTRELTIQNMEVLRKMGKYTGISSECAIPADSRDALPISKRAPIMAQVVIGTPGTIKKWMSFKKLGVSRLKILVFDEADQMLAEDGFKDNSLRIMKEIEKVNPHCQVLLFSATFNDTVKNFVSRTVKKDHNQLFVKKEELSLEAVKQYKVNCPDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSAKMLHKSLVDLGYEVTSIQGALDNEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDENLMAKIERHFGTHVTEVQEKNVEDYKRALKEAGLLQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0985 500 Gene3D - 308 497 IPR027417 -
Sto8g0985 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 497 IPR001650 -
Sto8g0985 500 CDD SF2_C_DEAD 314 458 - -
Sto8g0985 500 CDD DEADc_DDX19_DDX25 98 297 - -
Sto8g0985 500 Pfam Helicase conserved C-terminal domain 327 449 IPR001650 -
Sto8g0985 500 Gene3D - 69 307 IPR027417 -
Sto8g0985 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
Sto8g0985 500 MobiDBLite consensus disorder prediction 40 54 - -
Sto8g0985 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 468 IPR027417 -
Sto8g0985 500 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 479 - -
Sto8g0985 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 120 IPR014014 GO:0003724
Sto8g0985 500 PANTHER DEAD-BOX HELICASE DBP80 70 479 - -
Sto8g0985 500 MobiDBLite consensus disorder prediction 1 54 - -
Sto8g0985 500 SMART ultradead3 111 317 IPR014001 -
Sto8g0985 500 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Sto8g0985 500 SMART helicmild6 356 449 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0985 Sto-Chr8 6194665 6198472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0985 92 488 Eukaryotic Initiation Factors Gene Family AT1G72730 37.065 7.85e-72 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0985 K18655 - gmx:100778091 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0985 8 6194665 6198472 Sto8g0985 8 6194665 6198472 ECH