Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0975 ATGTCTTCTGTGCATGTTTCGGAGAATGCCAGCGGTGTAGTAGTTAAAGCATTGAAGCCAAAGGTTGAATCTAGTGTCAAGGCGGAGACTGCTCAAGAAGCTGCTCAGACAGCAAATACTGAACCAGATGGGAAATTGAACGCTGCTCTAAGTGCATTAACAACTTCACGGAACAAAATTGGAACTAAAAATGTCCAAGAAGCCTACTACTGTCAAGGAACTTTTCGATACTGGCTTCTGGTCTGCGGGGTGTTATTGCGGATGGAGGAATCTTGTGCTCGTGCTGTCTGTGCAATGGACGCAGGGTGTTATGCTATTGTCTTGCTTACCCAGCGTTTCTTGAGACATTTCCCCTCGTCATGCGTGGAAAGAGTAGGGCCTTTATGTAAAACTTGTGTGGAATCGAAGGAATTTGAAGAAAGTTCTATTGATCCAACTGCCAAAAGAGTCAgGTCCCCCAGACCAGTAGCAGTCTCCAAGCCACCTAGTGATTTAGAGCTGTGCAACTTATCACAAATTAATAGACATTGGAAGAAAAGAACAAGGACATCGAAATGGGTTAGTAGCTCGAAGTCTTCCGAGAGTGTTTCAGAGCCTATCCTATTACGAAAGAAGAATATGTGGAGGATGAAAAAGAAGGATCAGCGGTTGCATAAATTAGTTTTTGAGGAAGGTGGATTGCCAGATGGAACTGAAGTAGCTTATTATGGACGTGGACAGGTTACAAAATGGGCTTTGGAATACTTTGTCGGTGCTGCAACTCTGAGGTCAGCCCTTCACAATTTGAGATCCATGCAGGCTGTGCTTCTCGCAAGAAACCCCAGTAGAGTGCTCAAGCATTTTCATGAAAGTGCAATGTTTTTGAGCAGTTATGCATACATCTACACTTCGAATGGGGTGTCTCTCCATGAGTTAGCAATTTCTCTCTCAAAAGGTCGCAAATACTCTGCAAAGGATAATGATGATCTATGCATTATTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCTAGGGCATTTCATAAAGACTGCGCATCTCTATCAAGTATTCCACGTGGTGACTGGTACTGTAAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGAACACAATGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGGGTTGATCCTATTGAACAAATAACAAAGAGATGCATTCGCATTGTTAAAGACATAGAAGCTGAGCTGAGTGGCTGTGCATTATGCAGCAGATCTGGATTTGGTCCTCGCACAATTATACTCTGTGACCAGTGTGAAAAGGAATTTCATGTTGGCTGCTTGAGGGATCATAAAATGGCATATTTGAAGGAATTGCCAGAAGGAAAGTGGTTTTGTTGCTTGGATTGCAATAGAATACATTCTACTCTGCAGAAGTTCCTGGTTTGGGGGGCTGAGAGACTTCCTGACTATCTCTTGGATATTATAAAGATGAAGCAAGAAGAAAAGGGTTTAGAATTCATCAATGATATTGATGTAAGGTGGAGGCTTCTCAATGCCAAAATTTCTTCTCCTGAAACTAGGCCATTGCTTTCAGAGGCTATTTCAATTTTTCATGAATGTTTTGACCCTATAGTTGATTCAACCACTGGACGCGATCTTATTCCAGCCATGGTTTATGGAAGAAACGTGCGCAGTCAAGAGTTTGGAGGAATGTATTGTGCTATATTAACAGTCAATTCTTCTGTTGTATCAGCTGCCATGCTTCGAATTTTTGGCAGAGACGTGGCAGAACTTCCTTTAGTTGCAACAAGTAATGGTAACCACGGAAAGTGCATTGATTTCACCGTATGTGTTGACCCTAACAGGGATACTTCCAAACTCTTCGCCTGCATTGAGAGACTGCTGGTTTTCTTGAATGTTAAGAACCTTGTGCTACCAGCTGCGGAAGAAGCAGAATCGATATGGACAGATAAATTTGGGTTCAACAAAATGAATCCAGAGCAGATTAGTACCTACAGAAAAAAATGCTGTCAGATGGTGACATTCAAAGGGACGTCCATGCTTCAGAAAATGGTCGAGTCATCAACATGA 2070 0.4246 MSSVHVSENASGVVVKALKPKVESSVKAETAQEAAQTANTEPDGKLNAALSALTTSRNKIGTKNVQEAYYCQGTFRYWLLVCGVLLRMEESCARAVCAMDAGCYAIVLLTQRFLRHFPSSCVERVGPLCKTCVESKEFEESSIDPTAKRVRSPRPVAVSKPPSDLELCNLSQINRHWKKRTRTSKWVSSSKSSESVSEPILLRKKNMWRMKKKDQRLHKLVFEEGGLPDGTEVAYYGRGQVTKWALEYFVGAATLRSALHNLRSMQAVLLARNPSRVLKHFHESAMFLSSYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGNLLLCDGCPRAFHKDCASLSSIPRGDWYCKFCQNMFQREKFVEHNANAVAAGRVEGVDPIEQITKRCIRIVKDIEAELSGCALCSRSGFGPRTIILCDQCEKEFHVGCLRDHKMAYLKELPEGKWFCCLDCNRIHSTLQKFLVWGAERLPDYLLDIIKMKQEEKGLEFINDIDVRWRLLNAKISSPETRPLLSEAISIFHECFDPIVDSTTGRDLIPAMVYGRNVRSQEFGGMYCAILTVNSSVVSAAMLRIFGRDVAELPLVATSNGNHGKCIDFTVCVDPNRDTSKLFACIERLLVFLNVKNLVLPAAEEAESIWTDKFGFNKMNPEQISTYRKKCCQMVTFKGTSMLQKMVESST 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0975 689 SUPERFAMILY FYVE/PHD zinc finger 403 466 IPR011011 -
Sto8g0975 689 ProSiteProfiles Zinc finger PHD-type profile. 409 465 IPR019787 -
Sto8g0975 689 ProSitePatterns Zinc finger PHD-type signature. 324 363 IPR019786 -
Sto8g0975 689 Pfam PHD-finger 324 365 IPR019787 -
Sto8g0975 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 400 IPR013083 -
Sto8g0975 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 465 IPR013083 -
Sto8g0975 689 PANTHER AUTOIMMUNE REGULATOR 115 687 - -
Sto8g0975 689 ProSiteProfiles Zinc finger PHD-type profile. 321 366 IPR019787 -
Sto8g0975 689 CDD PHD1_AIRE 323 363 - -
Sto8g0975 689 SUPERFAMILY FYVE/PHD zinc finger 312 368 IPR011011 -
Sto8g0975 689 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 115 687 - -
Sto8g0975 689 SMART PHD_3 411 463 IPR001965 -
Sto8g0975 689 SMART PHD_3 323 364 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0975 Sto-Chr8 6130895 6137224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0975 117 687 PHD Transcription Factor Family AT2G36720 47.903 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto8g0975 PHD 1.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0975 - - gmx:100802562 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0975 8 6130895 6137224 Sto13g3160 13 35779818 35790125 CCT
Sto13g3778 13 39458004 39461717 Sto8g0975 8 6130895 6137224 CCT