Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0950 ATGCTCCAAACAAGCTGCATTTTGCTAATCTCCTTCATGGCTTCCTTTTTACCACTTGGAGGAGCAATGCTGAACCTCACTCTTCCTGGTCAACATCCGGACCCCGAGTCTGTTGTACAAGAAGTTCATAGGAAAGTGAATGCTTCAATTGCAAGAAGGCAGATGCTAGGGGAGTCGGAGATGGAGGAATCGTCGTCGTGTCTGACAGGAAACCCCATAGACGATTGCTGGAAATGCGACCCAGATTGGCCCAACAACAGGCAGAGGTTAGCGGAGTGCGCCATTGGGTTCGGACAGTACGCGAAGGGAGGGCAGGGTGGGGAATTCTACATCGTGACGGATTCCTCTGACGACGACGCCGTTACCCCAAAACCCGGTACGCTGAGATACGCAGTGATACAGACGCAGCCACTGTGGATCGTTTTCCCCAGTAATATGATGATAAAGCTGTCTCAGGAGCTCATCTTTAATAGCTACAAAACCCTTGATGGCCGCGGCGCTGATGTCCACATTGTGGGCGGTGGCTGCATTACTCTCCAGTATATCAGCAATGTCATCATTCACAACATTCACATCCACCATTGTCATCAATCAGGTAATGCTAACGTGCGGTCGAGCCCAGAGCACTACGGATGGAGGACAGAATCGGACGGTGATGCGATATCCATATTCGGATCAAAAGACATATGGATCGACCACTGCACGCTGTCTCGGTGTAAAGACGGGTTGATCGATGCGGTGATGGGGTCCACAGGAATAACGATATCGAACAACTTCTTCTCGCATCACAACGAGGTGATGCTGTTGGGTCACAGCGACGATTACCTGCCAGACTCGGGCATGCAGGTGACCATCGCCTTTAACCACTTCGGAGAGAAGCTGGTGCAGAGGATGCCACGTTGCAGAAGGGGATACATCCACGTGGTGAATAACGATTACACCCACTGGGAGATGTATGCCATCGGAGGTAGTGGAAACCCTACCATTAACAGCCAGGGGAATCGCTATACGGCGCCGTCTAATCCCTTCGCCAAGGAGGTTACAAAGAGAGTGGACACGGAAGAAGGGAAGTGGAAGGGATGGAATTGGAGGTCGGAAGGggatattttggtaaatggagcATTCTTCGTCGCCTCAGGGgaagggtttgaggttaagtACGAGAAGGCCTACAGTATCGAGCCTAAGTCCGCAGAGCATATTGATCTCCTCATTATGCATGCAGGCGTACTCGGCGTTTCCAGGGACAATAACTTGGGTATGTGGAGTAGAGGGCCCAATGATGATGGAGGTGAGGTGTCAGAGTCTGGCCAAGAATACACGGACGAGATGTCTGGGAGTACAAGGTTGCAGCCACATTCATCTACAGTCACTCTCATTTTGTCTTGCATTGCGTTGTTGTGCTTTTTAATGTTATCTCATAACCTACCCCTAACAACCATTCTATAA 1449 0.4921 MLQTSCILLISFMASFLPLGGAMLNLTLPGQHPDPESVVQEVHRKVNASIARRQMLGESEMEESSSCLTGNPIDDCWKCDPDWPNNRQRLAECAIGFGQYAKGGQGGEFYIVTDSSDDDAVTPKPGTLRYAVIQTQPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHQSGNANVRSSPEHYGWRTESDGDAISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPSNPFAKEVTKRVDTEEGKWKGWNWRSEGDILVNGAFFVASGEGFEVKYEKAYSIEPKSAEHIDLLIMHAGVLGVSRDNNLGMWSRGPNDDGGEVSESGQEYTDEMSGSTRLQPHSSTVTLILSCIALLCFLMLSHNLPLTTIL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0950 482 MobiDBLite consensus disorder prediction 421 450 - -
Sto8g0950 482 Gene3D - 70 412 IPR012334 -
Sto8g0950 482 PANTHER PECTATE LYASE 18-RELATED 1 428 IPR045032 GO:0030570
Sto8g0950 482 PANTHER PECTATE LYASE 12-RELATED 1 428 - -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Sto8g0950 482 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Sto8g0950 482 Pfam Pectate lyase 155 334 IPR002022 -
Sto8g0950 482 SMART amb_all 145 342 IPR002022 -
Sto8g0950 482 SUPERFAMILY Pectin lyase-like 66 393 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0950 Sto-Chr8 5991572 5993678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0950 1 476 Polysaccharide Lyase AT3G53190 73.859 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0950 K01728 - gmx:100775595 783.867