Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0948 ATGGAGTGCATCATTGAGCCCCAGATGTCCACCCATGGAATTGACGGCTCTCTTTCGGATAATTCGATTGAAGTTGACCCCGTTGATCGCCATGACATTCCCCGTCACGATTTGAAGAGAGTTATCTGTTCCTTGTGTAGCACAGAGCAAGATGTTCAACAGATGTGTATTAAATGTGGTGTTTGCATGGGGAAATATTTCTGCTCCAAGTGCAAGTTTTTTGATGATGATGCATCAAAGAATCAATACCATTGCAATGAATGTGGTATCTGCAGAATTGGAGGCGAGGAGAATTTTTTTCACTGCAACAAATGTGGATGTTGCTATTCAAATTTGTTGAAGGATTCACACCATTGTGTGGAAAAAGCAATGCATCACAATTGCCCGGTTTGCTTTGAGTTTCTTTTCGACACCACAAAAGACATCACTGTCTTGCCATGTGGTCACACCATACATCTGGGATGTGTGAAAGAAATGGAGCAGCATTTCCAGTATTCATGCCCTGTTTGCTCcaaatctttttgtgatatgtCGCGCGTGTGGGAGAGACTGGATCATGAGgTTGCATCAACACCAATGCCAGAAATGTATCAGAATAAGATGGTTTGGATTCTGTGCAATGATTGTGGGGAAACATCGGAGGTAAGCTTTCACGTTGTGGCACACAAGTGTATGAAATGCAAATCCTACAACACAAGACAGACACAAGGTGGGTCTACTTCATCATGCTCCTCCAACATTCAAGAGGTGTTGTCATGA 759 0.4203 MECIIEPQMSTHGIDGSLSDNSIEVDPVDRHDIPRHDLKRVICSLCSTEQDVQQMCIKCGVCMGKYFCSKCKFFDDDASKNQYHCNECGICRIGGEENFFHCNKCGCCYSNLLKDSHHCVEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVKEMEQHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEMYQNKMVWILCNDCGETSEVSFHVVAHKCMKCKSYNTRQTQGGSTSSCSSNIQEVLS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0948 252 Pfam CHY zinc finger 29 73 IPR008913 GO:0008270
Sto8g0948 252 SUPERFAMILY RING/U-box 126 177 - -
Sto8g0948 252 SUPERFAMILY Zinc hairpin stack 64 121 IPR037275 -
Sto8g0948 252 SUPERFAMILY CHY zinc finger-like 28 63 IPR037274 GO:0008270
Sto8g0948 252 ProSiteProfiles Zinc finger RING-type profile. 128 171 IPR001841 -
Sto8g0948 252 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 249 - -
Sto8g0948 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 24 249 - -
Sto8g0948 252 SMART ring_2 128 170 IPR001841 -
Sto8g0948 252 Pfam Zinc-ribbon 175 233 IPR039512 -
Sto8g0948 252 Gene3D - 199 242 - -
Sto8g0948 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 173 IPR013083 -
Sto8g0948 252 ProSiteProfiles Zinc finger CTCHY-type profile. 63 127 IPR017921 -
Sto8g0948 252 Pfam Ring finger domain 127 170 IPR001841 -
Sto8g0948 252 ProSiteProfiles Zinc finger CHY-type profile. 1 61 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0948 Sto-Chr8 5977108 5979489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0948 26 233 C2H2 Transcription Factor Family AT3G18290 40.187 1.23e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0948 K10144 - mnt:21405387 448.358