Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0943 ATGGAGGCCATAGAGTTGTGCATGAATAAGCAGCAGGATCAATCCCAAATCATGAAGGGGAAGCGCACCAAGCGTCCCAGGCTACCCTCCCCACTGAGGCTAACCATGGCTACCTGTAGCAGCGAGGAAGGAGGAATAATGAACAATTATGATATGGGGACCACAACAACCAGCTCAAATGATGAGCAATTGAAATTGAGGGAAAGcacagaagaagaagaggacatGGCCAACTGTTTGATGCTTCTGGCTCAGGGCCATAGCCGCAAACCCAATATTGTTTCAGAAAACAAGGTATACGTGTATCAGTGCAAGACGTGTGAGCGATGCTTCCCTTCGTTCCAAGCGCTGGGTGGACACAGAGCCAGCCACAAGAAACCAAAGCCAAATCTAATGAATACGGAAGCAATCAAGGTTAGTTTTGGGAAGGAAGAAGTGGACGGGCAGGTGGGAAGCACAAGCACCACTCTGTCCTTGTATAGCAGCGGCAGTAGTAGTAAGTGTAAGGTTCACGAGTGTTCTATTTGTGGGGCTGAGTTCTCGTCTGGTCAAGCCTTGGGGGGTCACATGAGGCGCCACAGAACATTTCCCACCAATGTTTTGAAGTTGGATTTGAATCTTCCCGCTCCTGATGATCATGATCACACTCACAGACAATCCAATTTGTCAAataatcttcttcttttctccgcCTCTTCCTTGGTGGATTGCCATTACTGA 720 0.4556 MEAIELCMNKQQDQSQIMKGKRTKRPRLPSPLRLTMATCSSEEGGIMNNYDMGTTTTSSNDEQLKLRESTEEEEDMANCLMLLAQGHSRKPNIVSENKVYVYQCKTCERCFPSFQALGGHRASHKKPKPNLMNTEAIKVSFGKEEVDGQVGSTSTTLSLYSSGSSSKCKVHECSICGAEFSSGQALGGHMRRHRTFPTNVLKLDLNLPAPDDHDHTHRQSNLSNNLLLFSASSLVDCHY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0943 239 SMART c2h2final6 102 124 IPR013087 -
Sto8g0943 239 SMART c2h2final6 171 193 IPR013087 -
Sto8g0943 239 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 197 238 - -
Sto8g0943 239 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 14 197 - -
Sto8g0943 239 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Sto8g0943 239 Gene3D Classic Zinc Finger 100 193 - -
Sto8g0943 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 193 IPR013087 -
Sto8g0943 239 SUPERFAMILY beta-beta-alpha zinc fingers 101 193 IPR036236 -
Sto8g0943 239 PANTHER ZINC FINGER PROTEIN ZAT5 197 238 - -
Sto8g0943 239 PANTHER ZINC FINGER PROTEIN ZAT5 14 197 - -
Sto8g0943 239 Pfam C2H2-type zinc finger 170 194 - -
Sto8g0943 239 Pfam C2H2-type zinc finger 101 127 - -
Sto8g0943 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Sto8g0943 239 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0943 Sto-Chr8 5950883 5951692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0943 17 239 C2H2 Transcription Factor Family AT5G03510 39.068 1.70e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g0943 zf-C2H2_6 1.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0943 - - qlo:115953454 218.394