Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0935 ATGGGTAGAGCTCCTTGCTGTGATAAGGCAAATGTAAAGAGAGGGCCATGGTCTCCTGAAGAAGATGCAACTCTAAAGGACTACATACACAAACATGGAACCGGAGGCAATTGGATTGCTCTCCCACGAAAGGCTGGTCTGAAAAGATGTGGGAAAAGCTGTAGACTGAGGTGGCTCAATTATCTGAGACCTAACATCAAACACGGCGACTTCTCTGAAGATGAAGATAGGCTAATCTGCACCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCAGGTCAGCTTCCTGGAAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAGAAAATGATGGGCTCCAACCCTTATTCATTTCACCAAGCTACTCTATTATCCATTCTCCAAAATTCAGCATCATCTtcatcctcctcctcatcatctTCACCATTATCCTTTTTCCAGCCCCAAGAAAGTTTGATGGGCCCCATTCAGAAGGATCATAGGGTGCTCATGTTTGGGGGTGAAGCTAGTTGCAGCTCTTCTGAAGAGAATCGTGTGAAAGAAGCAGAGGTGGGATACCATGGGACTTTTGTCAAACACATGATGGGCGTACATGACTATGATTACAATTACGTGCAGAGTAGTGGGATGGAAATGGAAGAAAGTGAGTGGAGAGAGAAACAAAGTGGATTATGggaagagaataataataattcaggaTTAGATTATGGGATAGAGGAGATTAAAGAGCTAataagtagtagtagtagttacAACAACTTATTGTTTGATGAAAACCACACAGACACAAAGGCTCTGTACCATCCCCACTACTACTACTGCTGA 846 0.4031 MGRAPCCDKANVKRGPWSPEEDATLKDYIHKHGTGGNWIALPRKAGLKRCGKSCRLRWLNYLRPNIKHGDFSEDEDRLICTLFASIGSRWSIIAGQLPGRTDNDIKNYWNTKLKKKMMGSNPYSFHQATLLSILQNSASSSSSSSSSSPLSFFQPQESLMGPIQKDHRVLMFGGEASCSSSEENRVKEAEVGYHGTFVKHMMGVHDYDYNYVQSSGMEMEESEWREKQSGLWEENNNNSGLDYGIEEIKELISSSSSYNNLLFDENHTDTKALYHPHYYYC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0935 281 CDD SANT 71 113 IPR001005 -
Sto8g0935 281 Gene3D - 70 132 - -
Sto8g0935 281 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sto8g0935 281 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Sto8g0935 281 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Sto8g0935 281 CDD SANT 16 62 IPR001005 -
Sto8g0935 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Sto8g0935 281 PANTHER OS09G0431300 PROTEIN 1 164 - -
Sto8g0935 281 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto8g0935 281 SMART sant 13 64 IPR001005 -
Sto8g0935 281 SMART sant 67 115 IPR001005 -
Sto8g0935 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Sto8g0935 281 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sto8g0935 281 Gene3D - 7 68 - -
Sto8g0935 281 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0935 Sto-Chr8 5878379 5879433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0935 1 119 MYB Transcription Factor Family AT5G57620 85.714 3.76e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g0935 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0935 K09422 - pop:112324492 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0935 8 5878379 5879433 Sto13g3191 13 35957583 35958700 CCT
Sto8g0935 8 5878379 5879433 Sto8g0935 8 5878379 5879433 ECH