Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0906 ATGTCTACCTCTGCCACTTCCTTAGCTCTTCCTActctcaattccaattccaattcccaaTCACTCTTCCATTCCAAACAACCTCTCTGCTCTTTCCATGCTCTCTCTTCCCTTTCTCTCAGACTCAATTCCAACCCCATTTCTATCTCTGCCTCTTTCCTTCACTTCCACACACCTTCTCCCACTTTTTCGTCTCATTTGGTCCCCCATGTCGCTCTTTCTTCTCAGTTCGACCAAGAAGAGGATACCGCGAGTGAAGGAGACGACCTCAGCGTCTCCCCCGACCTCAAACTCTTCGTCGGTAATCTTCCTTTCAGTATTGACAGCGCCCAACTCGCTGAATTGTTCGAAAGCGCTGGAAATGTAGAGACGGTTGAGGTAATTTATGATAAAATGACCGGAAGAAGTAGGGGATTTGGTTTTGTGACCATGTCTTCCGCTGAAGAAGTTGCAGCAGCCACTCGACAATTCCATGGATATGAACTGGAGGGAAGGGCACTGAGAGTAAATTCTGGGCCTCCTCCTCCTCGCAGGGAGAATTCCCCTTTTAGAGGTGCCAGAGGTGGTTCTGTTTCGGGCACAGGAAACCGAGTCCATGTGGGTAATCTTGCATGGGGTGTTGATAACGAGGCACTTGAGACATTGTTTGGTGAGCTAGGAAATGTTTTGGAAGCCAGGGTAATCTATGACAGAGAAAGTGGAAGATCAAAAGGATTTGGATTTGTAACTTACAGTAGCGCTGAAGAGGTTAACAGTGCTATTGAGTCCTTAGATGGGGTGGACTTGAGTGGGAGACCTATTCGAGTCTCATTAGCAGATGCTAAGCCAATAAGGCgtccattttaa 846 0.4563 MSTSATSLALPTLNSNSNSQSLFHSKQPLCSFHALSSLSLRLNSNPISISASFLHFHTPSPTFSSHLVPHVALSSQFDQEEDTASEGDDLSVSPDLKLFVGNLPFSIDSAQLAELFESAGNVETVEVIYDKMTGRSRGFGFVTMSSAEEVAAATRQFHGYELEGRALRVNSGPPPPRRENSPFRGARGGSVSGTGNRVHVGNLAWGVDNEALETLFGELGNVLEARVIYDRESGRSKGFGFVTYSSAEEVNSAIESLDGVDLSGRPIRVSLADAKPIRRPF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0906 281 MobiDBLite consensus disorder prediction 166 194 - -
Sto8g0906 281 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 276 - -
Sto8g0906 281 PANTHER OS02G0815200 PROTEIN 1 276 - -
Sto8g0906 281 CDD RRM_HP0827_like 97 170 - -
Sto8g0906 281 Gene3D - 71 193 IPR012677 -
Sto8g0906 281 Gene3D - 194 280 IPR012677 -
Sto8g0906 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Sto8g0906 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Sto8g0906 281 SUPERFAMILY RNA-binding domain, RBD 91 196 IPR035979 GO:0003676
Sto8g0906 281 SMART rrm1_1 197 270 IPR000504 GO:0003723
Sto8g0906 281 SMART rrm1_1 97 170 IPR000504 GO:0003723
Sto8g0906 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Sto8g0906 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 168 IPR000504 GO:0003723
Sto8g0906 281 SUPERFAMILY RNA-binding domain, RBD 194 279 IPR035979 GO:0003676
Sto8g0906 281 CDD RRM_HP0827_like 197 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0906 Sto-Chr8 5698233 5700474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0906 98 279 Eukaryotic Initiation Factors Gene Family AT4G34110 27.807 9.44e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0906 - - qsu:112036361 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0906 8 5698233 5700474 Sto8g0906 8 5698233 5700474 ECH