Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0899 ATGATTACGTTTATGGATTCGAAAGAGAAACTAAAAGAGGTGGACAAGTGTTTGGATGGTCAGCTATGGCATGCTTGTGCCGGCGGGATGGTGCAAATGCCGCCGGTGAACACAAAAGTTTTCTACTTCCCTCAGGGTCACGCGGAGCATGCATGTGGACCCGTAGACTTCAGGTCTTGCCCCAAGATTCCCCCTCAAATTCTCTGCACACTCGCAGCAATCAAGTACTTGGCTGATCCTGAGACTGACGAGGTCTATGCCAAAATTAGCCTTCTTCCTCTTAATGCTGCGAATCACCCTGATTATGACAATGATCGTATACCACCCACCCAAACGCACCCTAAACCTGCTTCTTTTGCCAAAACTTTGACGCAGTCCGATGCCAACAATGGCGGTGGCTTTTCCGTTCCTAGATATTGTGCAGAGACTATTTTCCCCCGTTTGGATTACTCTGCGGATCCTCCTGTTCAAACCATTCTCGCTAAAGATGTTCATGGGGAGACATGGAAGTTCAGGCATATTTACAGAGGAACGCCAAGGCGGCATCTTTTGACCACTGGGTGGAGTACTTTTGTGAATCACAAGAAGCTCGTTGCGGGGGATTCAATTGTGTTCTTAAGAGCAGAAAATGGAGATCTCTGTGTCGGAATTAGACGAGCTAAGAGGGGAATTGGTGGTGGTCCCGACTCTTCCTCTGGCTGGAATCCGGCAGGTGGAAATTGCCATGTACCTTACGGAGGATTTTCGGCTTTCTTGAGGGAAGACGATAGCAAACTGTTAAGAAATGGGAATAGCAATGGTTTGATGTCGTCAAGTGGGAATCTGATGGGAAGAGGGAAAGTAAGGCCCGAAGCAGTTGTTGAAGCTGCGACTCTTGCTGCTAAAGGGCAGCCTTTTGAGGTTGTGTATTACCCTCGAGCCAGTACTCCTGAGTTCTGTGTCAAGGCCTCCTTGCTAAAAGCTGCACTGCAGATAAGATGGTGTTCTGGAATGAGGTTCAAGATGGCCTTTGAAACCGAGGATTCCTCGCGAATAAGTTGGTTTATGGGAACTATATCTTCAGTTCAAGTGGCTGATCCTCTTCGCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAGCCAGATTTACTTCAAAACGTCAAAAGAGTGAGTCCATGGCTTGTTGAATTGGTATCAAACATGCCTGCCATACATCCCTCCTCTTTCCCTCCACCACTGAAGAAAATGAGACTAGCTCAACATCCTGATTTCCCCTTTGATGCCCAAATTCCTATGCCCACATTTCCCACAAACCTTCTAGGGCCTACCAACCCCTTTCCTTGTGTACCCGAAACTTCTCCTGCCGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAACAAACTGCAGTCGGGTCTATTTCCGGCCGGACTTGATCACACTGCTTCTGCTTCACCTTTGAGGATCTCCAATAACCCCACTGTGAAAAACCCCAGCAGCATGAGTGACAATGTCTCTTGCTTACTATCAATAGCAACTTCTACTCACTCTTCAAAGAAACAGGATGATATGAAGGCACCACCCCAGCTTGTGCTTTTTGGCCAAACTATACTTAGTGAGCAGCAGATCTCTCTAAGCGCCTCTGGTGATACAGAAAATAGTTCATCTAATGGAAATGCTGATAAACTGACCAAGTTTTCTGATGCTTCCGGATCTGCTCGCCAAGACATTGGGGCAAATTTGGAGACTGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGAACTATGGACCTATCATTGCTTGGGTCTTATGATGAATTGTATAGGAAGCTAGAAGACATGTTTGGCATAGACAAATCTGAGATGGTCAGCCATGTAATTTACCGTGATATAACAACTGGGGCAGTCAAACACATTGGAGATGAACCATTCAGTGACTTTACAAAAACAGCCAGAAGGTTGACGATTCTAATGGATTCCAGCAGCGACAATTTAAGAGTGTag 2028 0.4655 MITFMDSKEKLKEVDKCLDGQLWHACAGGMVQMPPVNTKVFYFPQGHAEHACGPVDFRSCPKIPPQILCTLAAIKYLADPETDEVYAKISLLPLNAANHPDYDNDRIPPTQTHPKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPDSSSGWNPAGGNCHVPYGGFSAFLREDDSKLLRNGNSNGLMSSSGNLMGRGKVRPEAVVEAATLAAKGQPFEVVYYPRASTPEFCVKASLLKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPLRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIHPSSFPPPLKKMRLAQHPDFPFDAQIPMPTFPTNLLGPTNPFPCVPETSPAGMQGARHAHYGLSLSDLHLNKLQSGLFPAGLDHTASASPLRISNNPTVKNPSSMSDNVSCLLSIATSTHSSKKQDDMKAPPQLVLFGQTILSEQQISLSASGDTENSSSNGNADKLTKFSDASGSARQDIGANLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLEDMFGIDKSEMVSHVIYRDITTGAVKHIGDEPFSDFTKTARRLTILMDSSSDNLRV 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0899 675 Gene3D - 585 673 - -
Sto8g0899 675 Gene3D - 117 221 IPR015300 -
Sto8g0899 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 666 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto8g0899 675 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Sto8g0899 675 SMART B3_2 119 221 IPR003340 GO:0003677
Sto8g0899 675 ProSiteProfiles PB1 domain profile. 588 675 IPR000270 GO:0005515
Sto8g0899 675 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Sto8g0899 675 Gene3D - 326 400 - -
Sto8g0899 675 PANTHER AUXIN RESPONSE FACTOR 6 666 - -
Sto8g0899 675 CDD B3_DNA 118 219 IPR003340 GO:0003677
Sto8g0899 675 SUPERFAMILY DNA-binding pseudobarrel domain 113 222 IPR015300 -
Sto8g0899 675 Pfam Auxin response factor 289 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto8g0899 675 MobiDBLite consensus disorder prediction 549 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0899 Sto-Chr8 5668268 5670494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0899 14 675 B3 DNA Binding Superfamily AT4G30080 59.211 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto8g0899 B3 1.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0899 - - tcc:18597960 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0899 8 5668268 5670494 Sto8g2418 8 16495380 16497740 ECH
Sto8g0899 8 5668268 5670494 Sto8g0899 8 5668268 5670494 ECH
Sto8g0899 8 5668268 5670494 Sto12g0306 12 1847055 1849565 ECH
Sto8g0899 8 5668268 5670494 Sto7g0935 7 7346471 7348950 ECH