Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0885 ATGGGTAACACAGGAAGTAGCGGCGTTAGCAACCGTCGGAGAAATAGTAGCAGACGGAGTCATCCACCGCCACCGACGCCGGTTACGCCGCAGCCTGAAATCGCGGCCAATCGGTTTGTTTATCCTGCGTCTACACCTTACACATCACAATACCCAAACTCGAATCCTTCCCCGTATTATCAATACCCAGGTTACTATCCCGCTGGGCCACAATCTATGCCGGTGCCTTTGCCGGCTCCGATCGATCACCGACATCGTATGGGGTCTCATCCACACATGGACCCATCATGGATGGGTGGACGGTACCATTGTGGGCCTGTTATGCCTCCTCCTGCACCTTATGTAGAGCATCAGAAGGCGGTTACCATAAGGAACGATGTTAATGTCAAGAAGGAGACTCTAAGGATTGAACCAGATGAGGAAAATCCTGGGCGGTTCCTTGTAGCATTCACATTTGATGCCACCGTTGCTGGGAGCATCACCATACTTTTCTTTGGTAAAGAAGATGATGGCTGCATCCTTAAACCAATGAAGGAGAATATTATTGCCCCTGTGACCGTTAATTTCGAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCAATTGGAACCGGTATTGACTTTTCATTATTTAAGGAGTCAGAATTATTGAAAGTGGGTGAAATGGATGTCTGCCCTCTAGCAATCAAGGCAGAAGCATCCTGTGGTAAACAAGATGTATCAAATGAAAGTCTAACATCTGGTAGCAGAAACTCTCAGATAACTCAAGCAGTGTTTCAAAGGGAGAAAGGAGAATTCCAGGTGAAAGTAGTTAAGCAGATACTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGCATTGGGAATTTAGTAGAGAGTAACGTGGACGAGAATGATTCTGGAAAGGAGTGTGTCATCTGCCTCTCAGAGCCTCGAGACACAACTGTCCTTCCCTGCAGACACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATAGATGTCCGATTTGCAGACAGCCTGTTGAGAGGCTTTTGGAGATAAAGGTTAATAATAATGGTAACGAGCCTGAGGAATGA 1098 0.4654 MGNTGSSGVSNRRRNSSRRSHPPPPTPVTPQPEIAANRFVYPASTPYTSQYPNSNPSPYYQYPGYYPAGPQSMPVPLPAPIDHRHRMGSHPHMDPSWMGGRYHCGPVMPPPAPYVEHQKAVTIRNDVNVKKETLRIEPDEENPGRFLVAFTFDATVAGSITILFFGKEDDGCILKPMKENIIAPVTVNFEQGLGQKFRQPIGTGIDFSLFKESELLKVGEMDVCPLAIKAEASCGKQDVSNESLTSGSRNSQITQAVFQREKGEFQVKVVKQILWVNEMRYELQEIYGIGNLVESNVDENDSGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNNGNEPEE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0885 365 SMART ring_2 306 344 IPR001841 -
Sto8g0885 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 355 IPR013083 -
Sto8g0885 365 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 305 345 IPR045195 -
Sto8g0885 365 Pfam Zinc finger, C3HC4 type (RING finger) 304 350 - -
Sto8g0885 365 ProSiteProfiles Zinc finger RING-type profile. 306 345 IPR001841 -
Sto8g0885 365 PANTHER MAHOGUNIN 1 362 IPR045194 GO:0061630
Sto8g0885 365 MobiDBLite consensus disorder prediction 1 34 - -
Sto8g0885 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 362 - -
Sto8g0885 365 SUPERFAMILY RING/U-box 305 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0885 Sto-Chr8 5611848 5614098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0885 100 325 C3H Transcription Factor Family AT3G09770 61.803 3.37e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0885 - - cpap:110810743 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0885 8 5611848 5614098 Sto8g0885 8 5611848 5614098 ECH