Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0883 ATGCAAATCATATCTGCTCATGGTGCTACCCCTGACCCTTTCTCCTTATCCTCTTCCATCCAACCCTTCCCTCCTcaacaaatcccaaaccctaaccctaatcccccTCCCCTCcccaagaagaagagaaatctACCAGGAACACCAGATCCAGATGCGGAGGTCATCGCTCTGTCGCCCAAGTCTCTCATGGCGACCAATCGATTCATATGCGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAATCTGCAGCTTCACCGGAGGGGACACAACCTTCCATGGAAGCTTCGACAGAGGTCGAACAAGGAGGTTCGGAAGAAGGTGTACATCTGCCCGGAGAAGACATGCGTGCATCACGACCCTTCCAGAGCACTGGGAGACCTCACCGGCATAAAGAAGCATTACAGCAGAAAACACGGGGAGAAGAAGTGGAAGTGCGACAAGTGTTCGAAGAAATATGCTGTCCAATCCGATTGGAAAGCTCACACCAAAACCTGTGGCACTAGAGAATATAAGTGCGACTGTGGTACCCTCTTCTCAAGGAAGGACAGTTTCATCACCCACAGAGCTTTCTGCGATGCCTTAACAGAAGAGAGTGCCAGACTCACCTCTGTTGATACTCGGAATTTGAATTTCAAGAGCGACGAGAGCAGCGTCATGAACTCTCACTCCCATCACCCACACGCATTCGGCATTTCGCAATTTGGATTTCGTTCCGATTTTAATAACGGaatgggtatgggtatgggcATGGAGCAGCAAAGGCCAAGTTTGTCACTGTGGGTGAATCAGCTGGGAAATCCCCACATTAACAATAATACTCCTCTTGATGCTTTTGTGTCGTCATCAAGTGGTTTAGCCACTGCACTCCTTCAGAAGGCAGCTCAAATGGGTTCCACCAGAAGCACCAACCCCTCCATCTTCAGCGGCACCTTCGGAGTAATGAGCTCCTCTTCTTCACAGACCACTACAAGTCTACATAACAACAACAACGAAGTCCAAAACCGTAATGACAACGAGCTCAACCAAGTGTTTCACAATTTTAGTTCAACTATGATGGGGGCCACCAATAATAACTTTAGCTCATTCACGCATTCCTCAAACACTACTGTTCTTGATGAGCTTATGACGACGGTGCAACCCAATGCAACACAAGGTAATTCTAATACTAATAAACAACATCCACCACCCGATTCAGGGGAACATGGTTACACCAGAGATTTTCTAGGAGTGAGTGCGGCAGCAGAAGGTGGTGCGCCTCCTCCCTTCCTCCCCCAAGAGCTCGCAAAGTTTGCTTCCATGGCCTCCCCCATGCCTCTCTCTCATCAATTCTCTACTGCCACTACTACTCATCAGTGA 1362 0.4611 MQIISAHGATPDPFSLSSSIQPFPPQQIPNPNPNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARLTSVDTRNLNFKSDESSVMNSHSHHPHAFGISQFGFRSDFNNGMGMGMGMEQQRPSLSLWVNQLGNPHINNNTPLDAFVSSSSGLATALLQKAAQMGSTRSTNPSIFSGTFGVMSSSSSQTTTSLHNNNNEVQNRNDNELNQVFHNFSSTMMGATNNNFSSFTHSSNTTVLDELMTTVQPNATQGNSNTNKQHPPPDSGEHGYTRDFLGVSAAAEGGAPPPFLPQELAKFASMASPMPLSHQFSTATTTHQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0883 453 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Sto8g0883 453 PANTHER ZINC FINGER PROTEIN JACKDAW 13 436 IPR033243 GO:0003700
Sto8g0883 453 Gene3D Classic Zinc Finger 122 202 - -
Sto8g0883 453 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Sto8g0883 453 MobiDBLite consensus disorder prediction 382 406 - -
Sto8g0883 453 Gene3D Classic Zinc Finger 48 121 - -
Sto8g0883 453 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 436 - -
Sto8g0883 453 SMART c2h2final6 110 140 IPR013087 -
Sto8g0883 453 SMART c2h2final6 145 165 IPR013087 -
Sto8g0883 453 SMART c2h2final6 69 91 IPR013087 -
Sto8g0883 453 MobiDBLite consensus disorder prediction 382 397 - -
Sto8g0883 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Sto8g0883 453 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Sto8g0883 453 MobiDBLite consensus disorder prediction 1 53 - -
Sto8g0883 453 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0883 Sto-Chr8 5590021 5591840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0883 40 238 IDZ Gene Family AT5G03150 76.712 2.98e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g0883 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0883 K25870 - gmx:100801182 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0883 8 5590021 5591840 Sto13g3602 13 38422821 38424280 CCT
Sto8g0883 8 5590021 5591840 Sto8g0883 8 5590021 5591840 ECH