Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0882 ATGGAGAAAGATGCTAACTTGGAAATTCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAGGAGCTCATTGTTCACTATCTCAGAAACAAAGTCACCTCGTGTCCCCTCCCTGCTTCTTTCATGGCTGAGATAGATCTCTATAAGTTCAATCCATGGGAGCTTCCAAGTAAGGCTTTGTTTGGAGAGGATGAATGGTTTTTCTTTACTCCGAGGGACAGAAAGTATCCTAATGGATTGAGGCCTAATAGAGCAGCTGGTTCAGGTTACTGGAAGGCCACAGGCACTGATAAACCCATTCTTACTTCTTGTGGGATGAAGAGTATTGGAGTCAAGAAAGCCCTTGTTTTCTACAAAGGACGTCCCCCTAAGGGATCTAAGACTGATTGGATCATGCATGAGTATAGATTGCTTGACTCAATGATCTTCACTTCCAAACAAGCAGGGTCTATGAGACTAGATGAATGGGTGCTATGCAAGGTTCGTCAAAAAAGCAGCAGCCCAAGAAGCACCCAGGAAGACTGGAGTGAACATAGTTATGAACCAACAAGCTATTTTCAACAAATGAATTTTGAGAATCCTAATCCTGAACCTGTCAGAAACTCCGTGCACAATGAATTTCCGATGTTACCATACATTCTGGCATCTAAGGATACTCTTCCTTCCATTGGAATGGCCTCATCAAGCATAAGCTTTCAATGTAATGATAATGGAAAAGGTTTTGGTTCAGTCTATGAAGACAACTCAATTCTCACAGAAGTACAGCTCTTAGCATCCACTGCTGAGAGCTTGAAGAGAAAATTACCCCTTCAAGAGAAGCAGTTGGAGCTGTATTATGCTCCTCCCTTTAAGAAGCTAAGTGATCAGGAAGATGATGAGAGGGAAGTAGTAGATGAAGCTGTAAGTAAAGACAACTTTGATCCTTGGGCTTCCATCATGCAGCCTCAAGAGCTTTACAACTTCGCCTTCGCAGGATATATTGAGTGA 990 0.4263 MEKDANLEIQLPPGFRFHPSDEELIVHYLRNKVTSCPLPASFMAEIDLYKFNPWELPSKALFGEDEWFFFTPRDRKYPNGLRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLLDSMIFTSKQAGSMRLDEWVLCKVRQKSSSPRSTQEDWSEHSYEPTSYFQQMNFENPNPEPVRNSVHNEFPMLPYILASKDTLPSIGMASSSISFQCNDNGKGFGSVYEDNSILTEVQLLASTAESLKRKLPLQEKQLELYYAPPFKKLSDQEDDEREVVDEAVSKDNFDPWASIMQPQELYNFAFAGYIE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0882 329 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Sto8g0882 329 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Sto8g0882 329 PANTHER NAC TRANSCRIPTION FACTOR 56 1 292 - -
Sto8g0882 329 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 292 - -
Sto8g0882 329 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Sto8g0882 329 Gene3D NAC domain 20 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0882 Sto-Chr8 5580104 5581292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0882 10 174 NAC Transcription Factor Family AT1G61110 67.630 1.64e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto8g0882 NAM 7.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0882 - - gmx:100788799 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0882 8 5580104 5581292 Sto8g0882 8 5580104 5581292 ECH