Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0880 ATGGGGCATAGACATTTATATAGCATATCTCAGATATTTGAGAGTGATCATGACCAGAATTGGAATCATATGCATACTGATCAACATTATGTGCAACTAGGTAGGACTAGTGCAACAGAGAATGGTTCATTTATTTATCCTGTGGAAAATATGTCTATAGATGGTAGCCTTTTCACCACTCCTTGGAACAATGCCATGAGGTCAAATGGATATGTATCCTCAAGTATCAACATCGAAGTACCTCCCCATCAATCAGAAGCATCAGGATCTTCTCATGATCATTTTTTGCAATCATCAAATCCTGGAGCCTTTTTTGCAGTTTCTGAGAACTATGCTCACCAGCCTTCTTCTTCCAATTATGATAGACAGGCATTTCACGTTGCTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGAAGAGGACCTCACAAGCGAAAGAGTCCTGGAATTCCTTCAGTCTCTGAGAGAGGCAGTACAAGCAGATACTTCAATGCAGGAAGTTCAACCGATGTTCCTATATCTTCAGAAATAAGGCAGGAGAAGCCAAGCATGGATTCCCAATATATGCCTTGGGATCATGTTACCACGGCACCCACCTTCAGAGGCAATGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGAAATGTGAGAAGCCGTTCTGCACTTGATTTGGAATCCAACCTTTCTAGGACCCATTTATCCAGAAATCATTCGCACAACTTCTCTAATGGCCCACCCATTGAACATTCTAGCGCTGTGGATCTTTCTGGTCAGACTTCTAGTACATTGACAAGGGATTGGAATCAAATGAATATATCTTCTGCTCATGGGAGGGTGTTATTATCTGAATCAAGTGGATATAGTCATGAGCCAAGTCACTTGCTTGTTGGAAGTGGTGCTAGTAATGTTTCAATAGATGTGGGGGGTTACCATCATGAATATAATACAAGCATAAATCCTACTGTTCCTCAAAGTTTTCATGGTAACCTCACCCACACTGCTAGGGGAGTTCGAAGTAACTATTCTCAGAGGCCTGCACCTACTCCAACTTTTAGAACCTCTTCAAGCTTGCGCTTGGGACACATGGTGCCTTCAGATGATGGATTACAAATGGTAGCTGAAGGTTTCTCTTCTAGACATCCAAGACCATTAACCGCCGTTAACTGGCGAAATAGTGACAGAAATGGAAGGTCAAGGATATATAGTGAGAGATATCGATCATTGGCCGACGAGGCCAGTCTCCATGATCGATTTTCCTCTCAGGTATTTGGTGGTTTCATGATTGTTGATCGTGCATCACTGTACGGATCTAGAAATATGTTGGATCAGCATAGGGACATGAGGATGGACATTGACAATATGAGCTATGAAGAACTACTTGCACTTGGAGAGAGGATTGGCCATGTCAGCACTGGATTgtctgaaaatttgatttcaAAGTGTTTGACAGAATCAATATATTGTTCATCTGAGCAAAGTCAAGAGGATGGAAGTTGTGTAATCTGTCTGGAGGAGTACAAAGACATGGATGATGTTGGGACATTGAAAAGTTGTGGTCATGATTACCATGTGAGCTGCATCAGAAAGTGGTTATCTATGAAGAACCTATGTCCAATCTGCAAAGCTTCTGCTCTTCCTGATAATATCAAGGATAAATAA 1662 0.4134 MGHRHLYSISQIFESDHDQNWNHMHTDQHYVQLGRTSATENGSFIYPVENMSIDGSLFTTPWNNAMRSNGYVSSSINIEVPPHQSEASGSSHDHFLQSSNPGAFFAVSENYAHQPSSSNYDRQAFHVADGGFIDLTMGSGRGPHKRKSPGIPSVSERGSTSRYFNAGSSTDVPISSEIRQEKPSMDSQYMPWDHVTTAPTFRGNGLSIRGEGSLRNVRSRSALDLESNLSRTHLSRNHSHNFSNGPPIEHSSAVDLSGQTSSTLTRDWNQMNISSAHGRVLLSESSGYSHEPSHLLVGSGASNVSIDVGGYHHEYNTSINPTVPQSFHGNLTHTARGVRSNYSQRPAPTPTFRTSSSLRLGHMVPSDDGLQMVAEGFSSRHPRPLTAVNWRNSDRNGRSRIYSERYRSLADEASLHDRFSSQVFGGFMIVDRASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSENLISKCLTESIYCSSEQSQEDGSCVICLEEYKDMDDVGTLKSCGHDYHVSCIRKWLSMKNLCPICKASALPDNIKDK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0880 553 SMART ring_2 500 541 IPR001841 -
Sto8g0880 553 CDD RING-H2_TTC3 499 542 - -
Sto8g0880 553 Pfam Ring finger domain 499 542 IPR001841 -
Sto8g0880 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 546 IPR013083 -
Sto8g0880 553 MobiDBLite consensus disorder prediction 137 170 - -
Sto8g0880 553 MobiDBLite consensus disorder prediction 153 170 - -
Sto8g0880 553 ProSiteProfiles Zinc finger RING-type profile. 500 542 IPR001841 -
Sto8g0880 553 MobiDBLite consensus disorder prediction 235 259 - -
Sto8g0880 553 SUPERFAMILY RING/U-box 490 546 - -
Sto8g0880 553 MobiDBLite consensus disorder prediction 338 359 - -
Sto8g0880 553 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 549 - -
Sto8g0880 553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 549 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0880 Sto-Chr8 5564054 5566641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0880 1 552 C3H Transcription Factor Family AT2G37150 42.124 4.35e-119 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0880 - - gmx:100803627 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0880 8 5564054 5566641 Sto8g0880 8 5564054 5566641 ECH