Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0860 ATGGCTGAAGGTCCCGTCAGTCCAGGCGGTGGTGGGAGCCACGAGAGCGGTGATCAGAGCCCCCGCTCTAATGTCCGAGAGCAGGACAGGTACCTGCCCATCGCCAATATCAGCCGGATCATGAAGAAGGCGCTTCCTGCTAACGGAAAAATCGCCAAGGATGCCAAGGAGACCGTGCAGGAATGCGTTTCCGAGTTTATCAGCTTTATTACCAGCGAGGCGAGTGATAAGTGTCagaaagagaagaggaagactATTAACGGCGATGATTTACTTTGGGCAATGGCAACACTAGGGTTTGAGGATTATATCGATCCCCTGAAGATTTACCTGTCTAGATACAGGGAGGGTGATACAAAGGGGTCAATGAAGGGCGGAGAAGTATCTGCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGCTCACTCATCAAGGTTCTTTCTCACAAGGTGTTAATTATACCAATTCTCAGTTGAAGGAGTTTATGGTAGCACAGGCAGATAAATATCTCattaattcttatttttatgaaatttcaGCCTCAGGTTCAACGCGTGATGGTTCCTATGCGAGGCCCAGAATAGGTGATGTTGGTTCTTGtgcctag 609 0.4499 MAEGPVSPGGGGSHESGDQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREGDTKGSMKGGEVSAKKDVQPSPNAQLTHQGSFSQGVNYTNSQLKEFMVAQADKYLINSYFYEISASGSTRDGSYARPRIGDVGSCA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0860 202 MobiDBLite consensus disorder prediction 1 30 - -
Sto8g0860 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Sto8g0860 202 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto8g0860 202 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Sto8g0860 202 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Sto8g0860 202 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Sto8g0860 202 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto8g0860 202 MobiDBLite consensus disorder prediction 118 148 - -
Sto8g0860 202 MobiDBLite consensus disorder prediction 134 148 - -
Sto8g0860 202 Gene3D Histone, subunit A 18 157 IPR009072 GO:0046982
Sto8g0860 202 SUPERFAMILY Histone-fold 28 131 IPR009072 GO:0046982
Sto8g0860 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0860 Sto-Chr8 5455774 5458459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0860 7 164 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.152 3.09e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto8g0860 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0860 K08065 - gmx:100798667 288.115