Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0857 ATGCTGGATCTTAATCTCAACGTCGCTTCCTCTGATTCTGCATCCAATTCCGTCGAGATGCATACTACCGACAATATGCTACCACTTTCAGGTAGTCAAATGGATAGCTCTGGTAGCTTTAATTCTTCCGTCGTCAATGCCGATACCTCTACCAACACTTGTGACGAAGATTCTTGCTCTTATGGCGATGCCGTTGCTCATAACTTTGGAATACTAAAGAAGAACGCCGTAGATGATGGCACAAGCTCCAGAGCAGTTGAACTTCCTGTAGGCCAAAGTGAAAATGAACGTAATCGGACCATCCAGCTTTTCCCTAACGTCGGAGGCCAAGAGGCTCAAGTCATCACTGAATCGGGATTCGGCCAGCAGTTTCCTGGTGCGTCTTCAGGTAAGGGATGGTTGGATTTCATGTGCAAGGAAGTAGGTGACGGTGGACGGCCGGAACAGAGGATGCCACTCCTGCAGCAGCAGAGACCGCAGGTTAAGAAGAGCCGGCGGGGACCTAGGTCGCGGAGTTCTCAGTATCGCGGCGTTACATTTTATCGAAGAACTGGGAGATGGGAATCGCATATATGGGACTGTGGGAAGCAAGTGTACTTGGGCGGATTTGATACAGCGCATGCTGCAGCAAGGGCATATGATCGAGCTGCAATCAAATTCCGTGGCCTTGATGCAGATATCAATTTCAATGTCAGTGATTATGAGGAAGATATAAAGCAGATGAGTAACTTCTCAAAGGAAGAGTTTGTGCATATTCTGCGTCGGCAGAGTACCGGTTTTTCACGGGGAAGCTCAAAATACAGGGGAGTTACTCTTCACAAATGTGGGCGATGGGAAGCTCGCATGGGGCAGTTTCTTGGAAAAAAGTATATATATCTGGGGCTATTCGATAGCGAAATAGAGGCTGCAAGGGCTTATGATAAGGCAGCCATAAAATGTAATGGAAGGGAAGCTGTTACAAACTTTGAGCCTAGTTCATACGAAGGGGGGATAATTTGTCAGGCAGATAATGAAGATGGCAACCCAAATCTTGatcttagcttggccttagcTCCCCCTCCCCCTGCTTACCCTGGTGGTTTCCAAGTTCAGCCTGGCTGGATCAACCTACCTGTTGATGGGAGAGCTACGTTTCAACACTCTGCATCAAGATCAGTGACGGCCGACCCGTCACATGTTTTCTCGATAGCTTCCGAGCATCCTTCTATCTGGAACGGCACTAATTTCTTTCCCTTCGATAGGGAAAGAGCAATGGAGAAAAGAACGGAAGCTGAATCCCTGCCAAACTGGGCATTTCAATTCCAAGGTCCTTATGGCGGGGCAACTTTGGTTCCACCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTACAACAGCATTACCACCAGCAGCCAATACTCAAATTCATTTTCCAAACATGACGATCCTCCACCCTCAATTTTCTTCATCAGTCACTAACTCCAGCATCCTACCCCCCTTCTAA 1485 0.4727 MLDLNLNVASSDSASNSVEMHTTDNMLPLSGSQMDSSGSFNSSVVNADTSTNTCDEDSCSYGDAVAHNFGILKKNAVDDGTSSRAVELPVGQSENERNRTIQLFPNVGGQEAQVITESGFGQQFPGASSGKGWLDFMCKEVGDGGRPEQRMPLLQQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNVSDYEEDIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIKCNGREAVTNFEPSSYEGGIICQADNEDGNPNLDLSLALAPPPPAYPGGFQVQPGWINLPVDGRATFQHSASRSVTADPSHVFSIASEHPSIWNGTNFFPFDRERAMEKRTEAESLPNWAFQFQGPYGGATLVPPFSAAASSGFPSTTALPPAANTQIHFPNMTILHPQFSSSVTNSSILPPF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0857 494 ProSiteProfiles AP2/ERF domain profile. 174 230 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 ProSiteProfiles AP2/ERF domain profile. 266 323 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 CDD AP2 174 232 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 SUPERFAMILY DNA-binding domain 173 232 IPR016177 GO:0003677
Sto8g0857 494 SUPERFAMILY DNA-binding domain 265 324 IPR016177 GO:0003677
Sto8g0857 494 Gene3D AP2/ERF domain 173 232 IPR036955 GO:0003700|GO:0006355
Sto8g0857 494 Gene3D AP2/ERF domain 265 324 IPR036955 GO:0003700|GO:0006355
Sto8g0857 494 MobiDBLite consensus disorder prediction 145 175 - -
Sto8g0857 494 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 Pfam AP2 domain 265 315 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 Pfam AP2 domain 174 222 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 488 - -
Sto8g0857 494 CDD AP2 265 325 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 488 - -
Sto8g0857 494 SMART rav1_2 174 236 IPR001471 GO:0003700|GO:0006355
Sto8g0857 494 SMART rav1_2 266 329 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0857 Sto-Chr8 5420955 5423651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0857 161 348 AP2-EREBP Transcription Factor Family AT4G36920 80.412 3.34e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Sto8g0857 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0857 K09284 - gmx:100808212 548.125