Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0854 ATGGATGGTTGTTTAGGGTTCTCCGGCAAACAGGAAAAACCCTCCTTTTGCAAGGTTCTAGTCAAtgaattttcaactcaattgCGAATCCCACCAGAATTTATCAAGAAATTTGGTCAACATGTGCCAAACAGAGTAGCACTGAAGGTTTCTTTGGATAAATCTTGGGAGGTTGAAGTGGAAAGGGTTGAGAAATACAATGTTTTCTTGAAAAAAGGATGGGAGATATTTGCGGAAGATAATAATTTGGAATATGGGGACTTTCTGGTCTTcaaatattctaaaatttcaatattCAAGGTCACAATCTTTGGGACAACATGCTGTGTGAAGGAAATTCCTGTAGTCAGAGAGAGGAGTATTAGAACTTTTGCTGGCCAAAAGAATCAAGGGCAAGGGCAAGTTCAAGatcaaaggaaaagaaagaggattCAAGAGGAAGATGAACAGAACTTAGAAGCCAAGGGCCATCTCAGCAATGCAATCTTGAAAGGCACTGCAAGAAAAGTTGAcgaagGTGTAGGTGATTTGAATCAATCACTCAAACGAAGGACAAATGCAAGTGTTAGTACTTCTGCCGAAGATAGAGCGATAGACTTCAGTTCTGAGCATCCTTTTTTTCAAGTTCAATTGAGTGCTGCATATGCAAGTGGTTCATATTTGGCTATACCATCAGACTTTTTCAAGAGACATTTGAATAAGGGAAACCAGCAGGTAACAGTACAGATATCGGAGAACATTTGGACTATGAATGTTCACACCTACCACTGTTCTGGCACTAAGAAACATGCCAAAATATATGGGGGATGGAGGGAGTTTGTGACAGACAATGATCTGAAAATGGGAGATATTTGTATTTTTGAAATGATCAAAAGCTTCAAGCAAGTTCAGGAAGCTTTGACTGCCTTGCTGCCTAAGAAAACAGCAGTGTTCCATCCAAATTTGATCCATCTGACTCAAGGAGAACCATCCGCCGGCGTTGTTGTGGTGGCCATTGATAGAGAATCCCGAAGTTCCAACTATTGCAGTTCGTATTCTGCATCAACTACCATACACTCTATTATTCTCAGGCAccgaaaaaaaattgagagagaaggagaaacTCGAATGTGGCGAGCTGAGCTGCGTATACACTCCGTTATTGCTATTTGCTGCCACAACCCAACGATGGCTATGCCGAATTCATGTGGGAGAGAATGTTACGCTGATGTAGAGAATCATACGGCAGGCGATGTATTGTTTTCCCGAGCAAAAGATGGAGTGGGTCCCACTAAGTTTGGCGATAACTACTTGTGCCGCGACTGCGGTCCTCTGGTGCTATGA 1323 0.3953 MDGCLGFSGKQEKPSFCKVLVNEFSTQLRIPPEFIKKFGQHVPNRVALKVSLDKSWEVEVERVEKYNVFLKKGWEIFAEDNNLEYGDFLVFKYSKISIFKVTIFGTTCCVKEIPVVRERSIRTFAGQKNQGQGQVQDQRKRKRIQEEDEQNLEAKGHLSNAILKGTARKVDEGVGDLNQSLKRRTNASVSTSAEDRAIDFSSEHPFFQVQLSAAYASGSYLAIPSDFFKRHLNKGNQQVTVQISENIWTMNVHTYHCSGTKKHAKIYGGWREFVTDNDLKMGDICIFEMIKSFKQVQEALTALLPKKTAVFHPNLIHLTQGEPSAGVVVVAIDRESRSSNYCSSYSASTTIHSIILRHRKKIEREGETRMWRAELRIHSVIAICCHNPTMAMPNSCGRECYADVENHTAGDVLFSRAKDGVGPTKFGDNYLCRDCGPLVL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0854 440 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 294 - -
Sto8g0854 440 PANTHER B3 DOMAIN-CONTAINING 11 294 - -
Sto8g0854 440 SMART B3_2 207 307 IPR003340 GO:0003677
Sto8g0854 440 SMART B3_2 16 107 IPR003340 GO:0003677
Sto8g0854 440 CDD B3_DNA 14 104 IPR003340 GO:0003677
Sto8g0854 440 Gene3D - 186 299 IPR015300 -
Sto8g0854 440 Pfam B3 DNA binding domain 16 103 IPR003340 GO:0003677
Sto8g0854 440 Pfam B3 DNA binding domain 207 292 IPR003340 GO:0003677
Sto8g0854 440 CDD B3_DNA 205 292 IPR003340 GO:0003677
Sto8g0854 440 MobiDBLite consensus disorder prediction 135 151 - -
Sto8g0854 440 Gene3D - 8 109 IPR015300 -
Sto8g0854 440 SUPERFAMILY DNA-binding pseudobarrel domain 200 292 IPR015300 -
Sto8g0854 440 Coils Coil 135 155 - -
Sto8g0854 440 MobiDBLite consensus disorder prediction 127 151 - -
Sto8g0854 440 ProSiteProfiles B3 DNA-binding domain profile. 13 107 IPR003340 GO:0003677
Sto8g0854 440 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Sto8g0854 440 ProSiteProfiles B3 DNA-binding domain profile. 206 307 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0854 Sto-Chr8 5410595 5414614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0854 14 294 REM Transcription Factor Family AT4G31640 25.000 3.53e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto8g0854 B3 2.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0854 - - qlo:115964725 160.229